CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93166	Soybean	cytosol	98.24	98.43
VIT_10s0071g01060.t01	Wine grape	cytosol	92.17	92.35
VIT_08s0056g00190.t01	Wine grape	cytosol	91.78	91.96
GSMUA_Achr2P03840_001	Banana	cytosol	70.06	91.09
Solyc04g008740.2.1	Tomato	plastid	90.02	90.2
PGSC0003DMT400065094	Potato	cytosol	89.82	90.0
CDX81195	Canola	cytosol	40.9	89.7
CDY60039	Canola	cytosol	40.9	89.7
GSMUA_AchrUn_...	Banana	cytosol	79.45	89.62
GSMUA_Achr3P27180_001	Banana	cytosol	82.39	89.57
GSMUA_Achr9P23750_001	Banana	cytosol	86.3	87.85
CDY21551	Canola	cytosol	87.28	87.45
AT5G63680.2	Thale cress	cytosol	87.08	87.25
AT5G08570.3	Thale cress	cytosol	86.89	87.06
Bra009352.1-P	Field mustard	cytosol	86.89	87.06
CDX69938	Canola	cytosol	86.69	86.86
CDY41529	Canola	cytosol	83.76	86.82
CDX84432	Canola	cytosol	83.76	86.82
Os04t0677500-01	Rice	cytosol	86.69	86.69
Zm00001d001831_P001	Maize	cytosol	86.89	86.55
EES13103	Sorghum	cytosol	86.89	86.55
CDX81114	Canola	cytosol	83.37	86.41
CDY39852	Canola	cytosol	83.37	86.41
Bra037750.1-P	Field mustard	cytosol	86.11	86.27
Bra038654.1-P	Field mustard	cytosol	85.91	86.08
Bra006008.1-P	Field mustard	cytosol	85.71	85.88
CDX78344	Canola	cytosol	82.78	85.8
GSMUA_Achr8P13860_001	Banana	mitochondrion	84.54	84.87
TraesCS2D01G561700.1	Wheat	cytosol, golgi	83.76	83.27
TraesCS2B01G591300.1	Wheat	cytosol	83.76	83.27
TraesCS2A01G593000.1	Wheat	cytosol	83.56	83.07
HORVU2Hr1G040570.1	Barley	mitochondrion	71.62	82.43
CDY60038	Canola	cytosol	35.42	81.9
CDX81194	Canola	cytosol	33.86	80.47
KRH50504	Soybean	mitochondrion	76.91	78.44
KRG89466	Soybean	endoplasmic reticulum, nucleus	76.91	78.29
KRH70138	Soybean	cytosol	13.89	73.2
KRH08482	Soybean	cytosol	73.58	73.15
Zm00001d026619_P001	Maize	mitochondrion	86.89	72.91
KRH70137	Soybean	cytosol, endoplasmic reticulum	55.97	69.59
HORVU2Hr1G119460.2	Barley	cytosol, mitochondrion	51.47	59.1
KRG92070	Soybean	endoplasmic reticulum, nucleus	44.03	42.78
KRH34711	Soybean	endoplasmic reticulum	43.64	42.4
KRH32634	Soybean	endoplasmic reticulum	43.25	41.94
KRH20011	Soybean	nucleus	43.25	41.94
KRH67815	Soybean	cytosol, endoplasmic reticulum	42.86	41.56
KRG96114	Soybean	cytosol	42.86	40.41
KRH71733	Soybean	cytosol	10.96	40.0
KRH71730	Soybean	endoplasmic reticulum	14.29	37.82
KRH57945	Soybean	cytosol, endoplasmic reticulum	13.7	36.46
KRH57981	Soybean	cytosol	20.16	33.99
KRH38304	Soybean	cytosol	22.5	33.24
KRH44705	Soybean	cytosol	12.33	32.14
KRH77227	Soybean	plastid	33.86	31.74
KRH35201	Soybean	plastid	34.83	30.8
KRG91615	Soybean	nucleus	34.64	30.78
KRH28271	Soybean	cytosol	15.66	30.77
KRG92440	Soybean	cytosol, nucleus	27.01	30.4
KRH08770	Soybean	nucleus, plastid	34.25	30.33
KRH34357	Soybean	nucleus	27.98	30.11
KRH18451	Soybean	cytosol	13.7	27.45
KRH38305	Soybean	plastid	11.74	26.09
KRH35631	Soybean	plastid	28.77	25.26
KRG91145	Soybean	plastid	28.38	24.91
KRH24949	Soybean	cytosol, peroxisome, plastid	20.94	19.93

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	MapMan:2.1.1.8	Gene3D:2.40.33.10	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	EntrezGene:547791	UniProt:A0A0R0JW56	EnsemblPlantsGene:GLYMA_05G000700	GO:GO:0000166	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	GO:GO:0046872	InterPro:IPR015806
InterPro:IPR036918	ProteinID:KRH56499.1	EnsemblPlants:KRH56500	ProteinID:KRH56500	ProteinID:KRH56500.1	EMBL:L08632
PFAM:PF00224	PFAM:PF02887	PRINTS:PR01050	ScanProsite:PS00110	PANTHER:PTHR11817	PANTHER:PTHR11817:SF5
MetaCyc:PWY-1042	MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723	MetaCyc:PWY-6142	MetaCyc:PWY-6886
MetaCyc:PWY-6901	MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf
UniProt:Q42806	SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064	UniParc:UPI000012E004
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:70724..73665

Molecular Weight (calculated)

55305.7 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.011

Length

511 amino acids

Sequence
(BLAST)

001: MANIDIEGIL KQQQPYDGRV PKTKIVCTLG PASRSVEMTE KLLRAGMNVA RFNFSHGTHD YHQETLNNLK TAMHNTGILC AVMLDTKGPE IRTGFLKDGK
101: PIQLKEGQEV TITTDYDIKG DPEMISMSYK KLPVHLKPGN TILCSDGTIT LTVLSCDPDA GTVRCRCENT ATLGERKNVN LPGVVVDLPT LTEKDKEDIL
201: GWGVPNKIDM IALSFVRKGS DLVNVRKVLG PHAKNIQLMS KVENQEGVLN FDEILRETDA FMVARGDLGM EIPVEKIFLA QKMMIYKCNL VGKPVVTATQ
301: MLESMIKSPR PTRAEATDVA NAVLDGTDCV MLSGESAAGA YPELAVKIMA RICIEAESSL DYGAIFKEMI RSTPLPMSPL ESLASSAVRT ANKAKAKLIV
401: VLTRGGSTAK LVAKYRPAVP ILSVVVPVLS TDSFDWTCSD ETPARHSLIY RGLIPILGEG SAKATDAEST EVILEAALKS ATERALCKPG DAVVALHRIG
501: AASVIKICIV K

Best Arabidopsis Sequence Match ( AT5G08570.1 )
(BLAST)

001: MSNIDIEGIL KELPNDGRIP KTKIVCTLGP ASRTVSMIEK LLKAGMNVAR FNFSHGSHEY HQETLDNLRS AMHNTGILAA VMLDTKGPEI RTGFLKDGNP
101: IQLKEGQEIT ITTDYDIQGD ESTISMSYKK LPLDVKPGNT ILCADGSISL AVLSCDPESG TVRCRCENSA MLGERKNVNL PGVVVDLPTL TDKDIEDILG
201: WGVPNSIDMI ALSFVRKGSD LVNVRKVLGS HAKSIMLMSK VENQEGVINF DEILRETDAF MVARGDLGME IPIEKIFLAQ KLMIYKCNLA GKPVVTATQM
301: LESMIKSPRP TRAEATDVAN AVLDGTDCVM LSGESAAGAY PEIAVKVMAK ICIEAESSLD YNTIFKEMIR ATPLPMSPLE SLASSAVRTA NKARAKLIIV
401: LTRGGSTANL VAKYRPAVPI LSVVVPVMTT DSFDWSCSDE SPARHSLIYR GLIPMLAEGS AKATDSEATE VIIEAALKSA TQRGLCNRGD AIVALHRIGA
501: ASVIKICVVK

Arabidopsis Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UBM6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.