CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34711	Soybean	endoplasmic reticulum	97.34	97.34
KRH71730	Soybean	endoplasmic reticulum	33.65	91.71
KRH71733	Soybean	cytosol	23.95	90.0
VIT_13s0074g00210.t01	Wine grape	cytosol, plastid	84.41	84.25
KRH67815	Soybean	cytosol, endoplasmic reticulum	84.41	84.25
KRH32634	Soybean	endoplasmic reticulum	83.46	83.3
KRH20011	Soybean	nucleus	83.27	83.11
PGSC0003DMT400070265	Potato	cytosol	83.08	82.92
Solyc11g007690.1.1	Tomato	cytosol, extracellular, nucleus	76.24	81.84
KRG96114	Soybean	cytosol	83.84	81.37
KRH57945	Soybean	cytosol, endoplasmic reticulum	27.76	76.04
KRH57981	Soybean	cytosol	37.26	64.69
PGSC0003DMT400070332	Potato	endoplasmic reticulum, extracellular, vacuole	19.58	55.08
KRH70138	Soybean	cytosol	8.37	45.36
KRG93166	Soybean	cytosol	42.78	44.12
KRH56500	Soybean	nucleus	42.78	44.03
KRH50504	Soybean	mitochondrion	41.63	43.71
KRG89466	Soybean	endoplasmic reticulum, nucleus	41.44	43.43
KRH08482	Soybean	cytosol	38.97	39.88
KRH70137	Soybean	cytosol, endoplasmic reticulum	28.33	36.25
KRH44705	Soybean	cytosol	10.46	28.06
KRH38304	Soybean	cytosol	16.92	25.72
KRG92440	Soybean	cytosol, nucleus	21.86	25.33
KRH34357	Soybean	nucleus	22.62	25.05
KRH18451	Soybean	cytosol	11.79	24.31
KRG91615	Soybean	nucleus	25.67	23.48
KRH35201	Soybean	plastid	25.67	23.36
KRH77227	Soybean	plastid	24.14	23.3
KRH08770	Soybean	nucleus, plastid	25.1	22.88
KRH28271	Soybean	cytosol	11.03	22.31
KRH35631	Soybean	plastid	23.57	21.31
KRG91145	Soybean	plastid	23.57	21.31
KRH38305	Soybean	plastid	7.98	18.26
KRH24949	Soybean	cytosol, peroxisome, plastid	18.06	17.69

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	EntrezGene:100799747	Gene3D:2.40.33.10	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	MapMan:50.2.7	UniProt:A0A0R4J669	EMBL:ACUP02012727	EnsemblPlantsGene:GLYMA_20G189300	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	InterPro:IPR015806
InterPro:IPR036918	EnsemblPlants:KRG92070	ProteinID:KRG92070	ProteinID:KRG92070.1	PFAM:PF00224	PFAM:PF02887
PRINTS:PR01050	PANTHER:PTHR11817	PANTHER:PTHR11817:SF38	MetaCyc:PWY-1042	MetaCyc:PWY-2221	MetaCyc:PWY-5484
MetaCyc:PWY-5723	MetaCyc:PWY-6142	MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003	MetaCyc:PWY-7218
MetaCyc:PWY-7383	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf
InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064
UniParc:UPI0001B83740	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:42785982..42795373

Molecular Weight (calculated)

57923.2 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.017

Length

526 amino acids

Sequence
(BLAST)

001: MHSSPLLLEE PIRMASILEP SKPTFFPAMT KIVGTLGPKS RSVDIISHCL DAGMSVARFD FSWGDPEYHQ ETLENLRVAI KSTKKLCAVM LDTVGPELQI
101: ENKTDHPITL EADTLVVLTP DQNKEASSNL LPLNFTGLSK AVKKGDTIFI GKYLFTGSET ASVWLEVSEV EGEDVTCLVK NTATLSGSLF TVHVSQIHID
201: LPTLADKDKE VISTWGVQNN IDFLSLYTRH VEDIRHAREF LSKLGDLKQT HIYAKIENIE GMKHFDEILR EADGIILARG NLGIELPPEK VFLFQKAAIY
301: KCNMVGKPVV VTRVVDSMTD NLRPTRAEAT DVANAVLDGS DAILLGAETL RGQYPVETIS IVGKICAEAE KVHNQDLYFK KAVKYVGEPM SHLESIASSA
401: VRAAIKVKAS VIICFTSSGR AARLIAKYRP TMPVISVVIP QLKTNQLRWT FTGAFEARQS LIVRGLFPML ADPRHPAESR SGTNESILKV ALDHGKAFGI
501: IKPHDRVVVC QKVADSSVVK ILELED

Best Arabidopsis Sequence Match ( AT2G36580.1 )
(BLAST)

001: MHSSHLLLEE PIRMTSILEP SKSSFFPALT KIVGTLGPKS RSVEVIAGCL KAGMSVARFD FSWCDADYHQ ETLENLKIAV KSTKKLCAVM LDTVGPELQV
101: INKTEKAISL KADGLVTLTP SQDQEASSEV LPINFDGLAK AVKKGDTIFV GQYLFTGSET TSVWLEVEEV KGDDVICISR NAATLGGPLF TLHVSQVHID
201: MPTLTEKDKE VISTWGVQNK IDFLSLSYCR HAEDVRQARE LLNSCGDLSQ TQIFAKIENE EGLTHFDEIL QEADGIILSR GNLGIDLPPE KVFLFQKAAL
301: YKCNMAGKPA VLTRVVDSMT DNLRPTRAEA TDVANAVLDG SDAILLGAET LRGLYPVETI STVGRICCEA EKVFNQDLFF KKTVKYVGEP MTHLESIASS
401: AVRAAIKVKA SVIICFTSSG RAARLIAKYR PTMPVLSVVI PRLTTNQLKW SFSGAFEARQ SLIVRGLFPM LADPRHPAES TSATNESVLK VALDHGKQAG
501: VIKSHDRVVV CQKVGDASVV KIIELED

Arabidopsis Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178VX82]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.