Factsheet for Solyc10g083720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081570.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36580.1	Solyc08g081570.2.1	AT1G63970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072411	Potato	cytosol	93.93	99.2
VIT_08s0007g04170.t01	Wine grape	plastid	88.24	90.47
KRH67815	Soybean	cytosol, endoplasmic reticulum	90.32	90.32
Solyc09g008840.2.1	Tomato	unclear	89.56	89.56
AT3G52990.1	Thale cress	cytosol, plastid	89.18	89.18
Bra019634.1-P	Field mustard	cytosol, plastid	89.18	89.18
CDX76243	Canola	cytosol, plastid	89.18	89.18
TraesCS5A01G131100.1	Wheat	golgi	89.18	89.18
CDX73585	Canola	cytosol, plastid	88.99	88.99
CDY58286	Canola	cytosol, plastid	88.99	88.99
TraesCS5B01G131000.1	Wheat	golgi, unclear	88.99	88.99
Bra006965.1-P	Field mustard	cytosol, plastid	88.8	88.8
Bra028545.1-P	Field mustard	cytosol, plastid	88.8	88.8
CDX78139	Canola	cytosol, plastid	88.8	88.8
HORVU5Hr1G041120.7	Barley	cytosol	88.99	88.66
Os12t0145700-01	Rice	plasma membrane	88.61	88.61
CDY13321	Canola	cytosol, plastid	88.61	88.61
CDX67554	Canola	cytosol, plastid	88.61	88.61
Os11t0148500-02	Rice	plasma membrane	88.42	88.42
KRH20011	Soybean	nucleus	88.24	88.24
KRH32634	Soybean	endoplasmic reticulum	88.24	88.24
AT2G36580.1	Thale cress	cytosol, peroxisome, plastid	88.24	88.24
EES09257	Sorghum	cytosol, peroxisome, plastid	88.05	88.05
KRG96114	Soybean	cytosol	90.32	87.82
Zm00001d023379_P001	Maize	extracellular, plasma membrane	87.48	87.48
Zm00001d052494_P001	Maize	plasma membrane	87.48	87.48
KXG22956	Sorghum	cytosol, peroxisome, plastid	87.48	87.48
GSMUA_Achr10P...	Banana	cytosol	87.29	87.29
GSMUA_Achr11P...	Banana	plastid	84.44	86.58
GSMUA_Achr6P13430_001	Banana	cytosol	85.39	85.07
KRH57945	Soybean	cytosol, endoplasmic reticulum	29.98	82.29
GSMUA_Achr2P20210_001	Banana	plastid	85.2	82.23
Solyc11g007690.1.1	Tomato	cytosol, extracellular, nucleus	76.09	81.84
KRH57981	Soybean	cytosol	38.52	67.0
Solyc04g008740.2.1	Tomato	plastid	40.8	42.16
Solyc01g049650.2.1	Tomato	cytosol, mitochondrion, plastid	39.85	41.83
Solyc03g007810.2.1	Tomato	plastid	25.62	23.36
Solyc08g077180.2.1	Tomato	plastid	25.43	23.1
Solyc01g106780.2.1	Tomato	cytosol, plastid	24.48	22.43
Solyc09g082970.2.1	Tomato	plastid	23.34	20.74
TraesCS1D01G104600.1	Wheat	cytosol, extracellular, peroxisome	3.61	13.29
Solyc06g051930.2.1	Tomato	plastid	15.75	10.98

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:2.40.33.10	Gene3D:3.20.20.60	Gene3D:3.40.1380.20
MapMan:50.2.7	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	InterPro:IPR015806
InterPro:IPR036918	UniProt:K4D3F8	PFAM:PF00224	PFAM:PF02887	PRINTS:PR01050	PANTHER:PTHR11817
PANTHER:PTHR11817:SF38	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf
InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	EnsemblPlantsGene:Solyc10g083720.1
EnsemblPlants:Solyc10g083720.1.1	TIGRFAMs:TIGR01064	UniParc:UPI0002769F34	:	:	:

Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:K4D3F8]

Coordinates

chr10:+:63486646..63492181

Molecular Weight (calculated)

57326.3 Da

IEP (calculated)

7.164

GRAVY (calculated)

0.005

Length

527 amino acids

Sequence
(BLAST)

001: MHSNHLLLEE PIRMASILEP SKANFFPAMT KIVGTLGPKS RSVEAISACL KAGMSVARFD FSWGDSEYHQ ETLENLKASI KATKKLCAVM LDTVGAELQV
101: VNKRETPISL KEDAIVTLTP HQGQEASNEV LPINFGGLAK AVKKGDTIFV GQYLFTGSET TSVWLEVDQV NGDDVICVVK NSATLAGSLF TLHASQVHID
201: MPTLTDKDKE VISTWGVQNK IDFISLSYTR HAEDVREARE FLSKLGDLSQ TQIFAKIENV EGLTHFDEIL KEADGIILSR GNLGIDLPPE KVFLFQKAAV
301: HKCNMAGKPA VVTRVVDSMT DNLRPTRAEA TDVANAVLDG TDAILLGAET LRGLYPVETI STVGKICAEA GKVFNQDLYF KKTVKFVGEP MTHLEAIASS
401: AVRAAIKVKA SVIICFTSSG RAARLIAKYR PTMPVLSVVI PRLKTNQLKW SFSGAFEARQ SLIVRGLFPM LADPRHPAES NNATNESVLK VALDHGKASG
501: VIKSHDRVVV CQKVGDASVV KIIELED

Best Arabidopsis Sequence Match ( AT3G52990.1 )
(BLAST)

001: MHSSHLLLEE PIRMASILEP SKSSFFPALT KIVGTLGPKS RSVEALSGCL KAGMSVARFD FSWGDADYHQ ETLDNLKVAV RSTKKLCAVM LDTVGPELQV
101: INKSEKAITL KADGLVTLTP NQDQEASSEV LPINFNGLAK AVKKGDTIFV GQYLFTGSET TSVWLEVDEV KGDDVICLSR NAATLAGSLF TLHSSQVHID
201: LPTLTEKDKE VISTWGVQNK IDFLSLSYCR HAEDVRQTRE MLKKLGDLSQ TQIFAKIENV EGLTHFDEIL QEADGIILSR GNLGIDLPPE KVFLFQKAAL
301: YKCNMAGKPA VLTRVVDSMT DNLRPTRAEA TDVANAVLDG SDAILLGAET LRGLYPVETI STVGRICAEA EKVFNQDLYF KKTVKYVGEP MTHLESIASS
401: AVRAAIKVKA SVIICFTSSG RAARLIAKYR PTMPVISVVI PRVKTNQLKW SFSGAFEARQ SLIVRGLFPM LADPRHPAES TSATNESVLK VALDHGKHAG
501: VIKSHDRVVV CQKVGDASVV KIIELED

Arabidopsis Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:Q94KE3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.