Factsheet for TraesCS1D01G104600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, peroxisome
Any Predictor:	cytosol, extracellular, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G258500.1
TraesCS6D01G239700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36580.1	TraesCS6A01G258500.1	AT1G63970.1	21798944
AT2G36580.1	TraesCS6D01G239700.1	AT1G63970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G52990.1	Thale cress	cytosol, plastid	13.99	3.8
TraesCS5D01G138800.1	Wheat	cytosol	13.99	3.8
Solyc10g083720.1.1	Tomato	plastid	13.29	3.61
GSMUA_Achr10P...	Banana	cytosol	13.29	3.61
CDY58286	Canola	cytosol, plastid	13.29	3.61
GSMUA_Achr2P20210_001	Banana	plastid	13.29	3.48
Bra019634.1-P	Field mustard	cytosol, plastid	12.59	3.42
AT2G36580.1	Thale cress	cytosol, peroxisome, plastid	12.59	3.42
CDY13321	Canola	cytosol, plastid	12.59	3.42
Bra028545.1-P	Field mustard	cytosol, plastid	12.59	3.42
Bra006965.1-P	Field mustard	cytosol, plastid	12.59	3.42
CDX78139	Canola	cytosol, plastid	12.59	3.42
CDX67554	Canola	cytosol, plastid	12.59	3.42
CDX73585	Canola	cytosol, plastid	12.59	3.42
CDX76243	Canola	cytosol, plastid	12.59	3.42
GSMUA_Achr6P13430_001	Banana	cytosol	12.59	3.4
TraesCS4D01G104100.1	Wheat	cytoskeleton, cytosol, peroxisome	12.59	3.31
Solyc09g008840.2.1	Tomato	unclear	11.89	3.23
PGSC0003DMT400072411	Potato	cytosol	11.19	3.21
GSMUA_Achr11P...	Banana	plastid	11.19	3.11
PGSC0003DMT400006945	Potato	mitochondrion	10.49	3.01
TraesCS3D01G192800.1	Wheat	cytosol	9.79	2.73
TraesCS4D01G176600.1	Wheat	cytosol	9.09	2.55
TraesCS3D01G239500.1	Wheat	plastid	8.39	2.08
TraesCS4D01G018900.1	Wheat	plastid	7.69	2.04
TraesCS1D01G215900.1	Wheat	golgi	7.69	1.95
TraesCS2D01G561700.1	Wheat	cytosol, golgi	6.99	1.95
TraesCS2D01G237900.1	Wheat	plastid	5.59	1.4

Protein Annotations

EnsemblPlants:TraesCS1D01G104600.1	EnsemblPlantsGene:TraesCS1D01G104600	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:19.2.2.5.2	:

Description

No Description!

Coordinates

chr1D:-:96034437..96036578

Molecular Weight (calculated)

15800.8 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.085

Length

143 amino acids

Sequence
(BLAST)

001: MVSLQGPAEG PSHLSAGPVS EDMFHWQATI MGPSDSPFTG GLFLVNIHFP LDHPFNPPKV SFRIKVFHPN INSNGSICLD ILKEQWSPTL TISKVLLSIC
101: SLLTDPNPND PLVPEIAHMY KTDWAKYEST ACSWTQGTPW VDV

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.