CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90021
EER96686
EER98346
EES00516
EES03332
EES03779
EES18242
KXG19676
KXG22017
KXG30786
KXG34111
KXG37592
KXG37982
OQU79022
OQU79520
OQU80418
OQU80443
OQU86641
OQU92552

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22960.1	EES00516	AT1G19680.1	21798944
AT3G22960.1	OQU86641	AT1G19680.1	21798944
AT3G22960.1	EER96686	AT1G60010.1	21798944
AT3G22960.1	KXG19676	AT1G60010.1	21798944
AT3G22960.1	KXG30786	AT1G60010.1	21798944
AT3G22960.1	OQU80443	AT1G60010.1	21798944
AT3G22960.1	OQU92552	AT1G61590.1	21798944
AT3G22960.1	KXG37592	AT2G30580.1	21798944
AT3G22960.1	KXG37982	AT2G30580.1	21798944
AT3G22960.1	OQU79520	AT2G30580.1	21798944
AT3G22960.1	OQU79022	AT3G01690.1	21798944
AT3G22960.1	EER98346	AT3G59920.1	21798944
AT3G22960.1	EES18242	AT3G59920.1	21798944
AT3G22960.1	KXG22017	AT3G59920.1	21798944
AT3G22960.1	EES03779	AT3G60360.1	21798944
AT3G22960.1	KXG34111	AT5G04600.1	21798944
AT3G22960.1	OQU80418	AT5G04600.1	21798944
AT3G22960.1	OQU79022	AT5G14390.1	21798944
AT3G22960.1	EES03332	AT5G14660.1	21798944
AT3G22960.1	EER90021	AT5G35410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034443_P001	Maize	plastid	94.29	94.95
GSMUA_Achr4P21110_001	Banana	cytosol	61.25	84.69
KRG92440	Soybean	cytosol, nucleus	66.44	84.58
GSMUA_Achr4P28510_001	Banana	cytosol	60.9	84.21
KRH34357	Soybean	nucleus	67.65	82.32
EER95951	Sorghum	plastid	81.14	80.45
TraesCS2A01G240200.1	Wheat	plastid	77.85	78.95
TraesCS2D01G237900.1	Wheat	plastid	77.68	78.77
Bra001896.1-P	Field mustard	plastid	73.88	75.58
VIT_05s0020g04480.t01	Wine grape	plastid	76.47	75.43
CDY40829	Canola	plastid	74.39	74.52
Bra023780.1-P	Field mustard	plastid	74.05	74.18
CDY35484	Canola	plastid	74.05	74.18
HORVU2Hr1G050140.1	Barley	plastid	77.16	73.84
CDX92969	Canola	plastid	73.18	73.57
CDX94878	Canola	plastid	73.53	73.15
AT3G22960.1	Thale cress	plastid	75.09	72.82
TraesCS2B01G257800.1	Wheat	plastid	76.12	71.31
Solyc09g082970.2.1	Tomato	plastid	72.49	70.66
VIT_00s0179g00350.t01	Wine grape	plastid	67.47	68.54
EER91093	Sorghum	plastid	54.33	57.93
EES03378	Sorghum	plastid	39.27	39.14
EER94457	Sorghum	plastid	37.72	38.38
EES13103	Sorghum	cytosol	26.64	30.02
EES02767	Sorghum	cytosol	25.26	28.68
EER92334	Sorghum	cytosol	25.61	28.57
EES09641	Sorghum	cytosol	22.32	24.48
EES09257	Sorghum	cytosol, peroxisome, plastid	21.63	23.72
KXG22956	Sorghum	cytosol, peroxisome, plastid	21.28	23.34

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:2.40.33.10	MapMan:3.12.8	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	MapMan:5.1.2.1	UniProt:A0A1B6QHH0	InterPro:Arsenate_reductase-like	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	InterPro:IPR006660	InterPro:IPR015806
InterPro:IPR036918	EnsemblPlants:KXG37365	ProteinID:KXG37365	ProteinID:KXG37365.1	PFAM:PF00224	PFAM:PF02887
PRINTS:PR01050	ScanProsite:PS00110	PFscan:PS51353	PANTHER:PTHR11817	PANTHER:PTHR11817:SF14	MetaCyc:PWY-1042
MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723	MetaCyc:PWY-6142	MetaCyc:PWY-6886	MetaCyc:PWY-6901
MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf
InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	EnsemblPlantsGene:SORBI_3001G057200
SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064	UniParc:UPI00081ACD52	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:4319392..4325090

Molecular Weight (calculated)

63146.5 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.164

Length

578 amino acids

Sequence
(BLAST)

001: MATAARSLHH QGPTPSNPSP HRLPVPSHLR PQRHGCCSRR LAASSSDLTS FPEPDPAPNG VHVPWAAASS VATAAAAAAF DVDAATEAEL RENGFRSTRR
101: TKLVCTVGPA TCGAAELEAL AVGGMNVARV NMCHGDREWH RGVIRAVRRL NDEKGFAVAV MMDTEGSEIH MGDLGGASSA KAEDGEVWTF SVRSSDTSLP
201: DRIIHVNYDG FAEDVKAGDE LFVDGGMARF EVIEKLGPDV KCRCTDPGLL LPRANLTIWR DGSVVRERNA MLPTISSKDW IDIDFGIAEG VDFVAISFVK
301: SAEVINHLKS YISARSRGSD IGVIAKIESI DALKNLEEII RASDGIMVAR GDLGAQIPLE QVPSIQKKIV RMCRQLNKPV IVASQLLESM IEYPTPTRAE
401: VADVSEAVRQ RADALMLSGE SAMGRYPEKA LSVLRSVSLR IERWWREEKR HEALELQDVS SSFSDKISEQ ICNSAAKMAN NLGVDAVFVY TKDGYMASLL
501: SRCRPDCPIF AFTSSMSVRR RLNLQWGLIP FRLSESDDME NNLNRTFSLL KARGMVQSGD LVIALSDMLQ SIQVMNVP

Best Arabidopsis Sequence Match ( AT3G22960.1 )
(BLAST)

001: MSQSIQFSTP SHTPHLLHLP HSQFNRPLSS ISFRRFPLTT IKYTSIRASS SSSPSPDLDS SSSSSSSQVL LSPNGTGAVK SDERSVVATA VTTDTSGIEV
101: DTVTEAELKE NGFRSTRRTK LICTIGPATC GFEQLEALAV GGMNVARLNM CHGTRDWHRG VIRSVRRLNE EKGFAVAIMM DTEGSEIHMG DLGGEASAKA
201: EDGEVWTFTV RAFDSSRPER TISVSYDGFA EDVRVGDELL VDGGMVRFEV IEKIGPDVKC LCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD
301: IDFGIAEGVD FIAVSFVKSA EVINHLKSYL AARSRGGEIG VIAKIESIDS LTNLEEIILA SDGAMVARGD LGAQIPLEQV PAAQQRIVQV CRALNKPVIV
401: ASQLLESMIE YPTPTRAEVA DVSEAVRQRS DALMLSGESA MGQFPDKALT VLRTVSLRIE RWWREEKRHE SVPLQAIGSS FSDKISEEIC NSAAKMANNL
501: GVDAVFVYTT SGHMASLVSR CRPDCPIFAF TTTTSVRRRL NLQWGLIPFR LSFSDDMESN LNKTFSLLKS RGMIKSGDLV IAVSDMLQSI QVMNVP

Arabidopsis Description

PKP1Plastidial pyruvate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.