Factsheet for VIT_14s0219g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01690.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07089	Soybean	cytosol	90.76	90.76
Solyc02g067920.2.1	Tomato	cytosol	89.4	88.92
KRH58237	Soybean	cytosol	88.32	88.56
PGSC0003DMT400017818	Potato	cytosol	89.13	88.41
KRG93968	Soybean	cytosol	88.04	88.28
VIT_17s0000g09740.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	85.33	81.14
CDX91066	Canola	plastid	70.92	79.57
AT3G01690.1	Thale cress	cytosol, plastid	77.99	79.5
CDY09851	Canola	plastid	79.08	78.65
GSMUA_Achr9P02010_001	Banana	plastid	78.26	78.47
Bra008761.1-P	Field mustard	endoplasmic reticulum	78.53	78.11
AT5G14390.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.26	78.05
GSMUA_Achr3P17130_001	Banana	plastid	77.72	77.93
CDX69584	Canola	endoplasmic reticulum	78.26	77.84
CDY32850	Canola	cytosol	72.01	77.03
GSMUA_Achr8P28640_001	Banana	plastid	76.36	76.57
CDY28862	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	73.91	75.35
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	73.91	75.35
GSMUA_Achr9P07620_001	Banana	plastid	72.55	72.55
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	71.47	71.66
CDX85599	Canola	cytosol	50.82	71.65
CDY37505	Canola	cytosol, extracellular	13.04	71.64
Os12t0286600-01	Rice	cytosol, plastid	72.28	70.56
VIT_11s0149g00410.t01	Wine grape	cytosol	39.4	70.05
Zm00001d030601_P001	Maize	plastid	69.84	70.03
Bra023463.1-P	Field mustard	cytosol	50.82	68.0
VIT_01s0010g00670.t01	Wine grape	plastid	69.29	67.11
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.68	66.37
CDX77081	Canola	plastid	37.77	65.88
VIT_02s0012g02180.t01	Wine grape	mitochondrion, vacuole	35.05	62.62
VIT_11s0206g00050.t01	Wine grape	cytosol	40.76	62.5
VIT_14s0083g00800.t01	Wine grape	plastid	69.84	58.41
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	50.54	56.88
VIT_19s0015g01840.t01	Wine grape	plasma membrane	24.73	32.5

Protein Annotations

EntrezGene:100259513	wikigene:100259513	Gene3D:3.40.50.1820	MapMan:35.2	InterPro:AB_hydrolase	ProteinID:CBI17718
ProteinID:CBI17718.3	ncoils:Coil	UniProt:D7SPY9	EMBL:FN594962	InterPro:Hydrolase_4	InterPro:IPR029058
EntrezGene:LOC100259513	wikigene:LOC100259513	PFAM:PF12146	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	SUPFAM:SSF53474
UniParc:UPI00015C9AB0	ArrayExpress:VIT_14s0219g00290	EnsemblPlantsGene:VIT_14s0219g00290	EnsemblPlants:VIT_14s0219g00290.t01	RefSeq:XP_002269274	RefSeq:XP_002269274.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:26518227..26525024

Molecular Weight (calculated)

42293.6 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.622

Length

368 amino acids

Sequence
(BLAST)

001: MGGVTSSMAA KFAFFPPNPP SYKLIRDDLT GLLLLSPFPH RENVEVLKLP TRRGTEIVAV YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPSEQNTY ADIEAVYKCL EESYGAKQED IILYGQSVGS GPTLDLAARL PQLRAVVLHS PILSGLRVMY PVKRTYWFDI YKNIDKIPLV
201: NCPVLIIHGT SDEVVDCSHG KQLWELCKEK YEPLWLKGGN HCDLELYPEY IRHLKKFVST VEKSPSQRNS SRRSTDQFEQ SRRSTDVFEV SRKSTDRREK
301: PRQSTDRLEK QKNLSNNADK LEKLRMSFDQ MERSRRSVDC HEKSRKSIDH QLERARKSVD RLERIRTG

Best Arabidopsis Sequence Match ( AT5G14390.1 )
(BLAST)

001: MGGVTSSVAA KFAFFPPSPS SYKLVYDELT GLLLMNPFPH RENVEILKLP TRRGTEIVAM YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM
101: GYDYSGYGQS TGKPSEHHTY ADIEAAYKCL EETYGAKQED IILYGQSVGS GPTLDLAARL PQLRAAVLHS PILSGLRVMY PVKKTYWFDI FKNIDKIPLV
201: NCPVLVIHGT CDEVVDCSHG KQLWELSKEK YEPLWLEGGN HCDLEHYPEY IKHLKKFITT VERDLSSRAS TAQLEKQSSD LEMPRQSVDR REKPRQSVDK
301: REKEKPPKGP SKKSKLRITF EQHLDRTRRS VDFHEKARKS VDHHQHHQNH HQIERGRKSV DRLDRVRSE

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LY90]
SUBAcon: [extracellular,nucleus,cytosol,golgi,plasma membrane,vacuole,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.