CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX90305
CDY00020
CDY12116
CDY22394
CDY57012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01690.1	CDX72718	AT4G39050.1	21798944
AT3G01690.1	CDX90305	AT4G39050.1	21798944
AT3G01690.1	CDY12116	AT4G39050.1	21798944
AT3G01690.1	CDY22394	AT4G39050.1	21798944
AT3G01690.1	CDY00020	AT5G28900.1	21798944
AT3G01690.1	CDY57012	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32850	Canola	cytosol	95.29	100.0
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	100.0	100.0
AT3G01690.1	Thale cress	cytosol, plastid	83.93	83.93
CDY37505	Canola	cytosol, extracellular	14.96	80.6
CDY37504	Canola	cytosol	16.62	78.95
CDX69584	Canola	endoplasmic reticulum	79.5	77.57
CDX91066	Canola	plastid	70.36	77.44
CDY09851	Canola	plastid	79.22	77.3
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	75.35	73.91
KRH07089	Soybean	cytosol	74.52	73.1
CDX77081	Canola	plastid	42.66	72.99
KRH58237	Soybean	cytosol	73.13	71.93
KRG93968	Soybean	cytosol	72.85	71.66
Solyc02g067920.2.1	Tomato	cytosol	73.13	71.35
PGSC0003DMT400017818	Potato	cytosol	72.58	70.62
CDX85599	Canola	cytosol	50.97	70.5
GSMUA_Achr9P02010_001	Banana	plastid	67.59	66.48
GSMUA_Achr3P17130_001	Banana	plastid	67.31	66.21
CDY31930	Canola	cytosol	11.63	65.62
CDY03421	Canola	cytosol	64.82	65.18
GSMUA_Achr8P28640_001	Banana	plastid	65.93	64.85
CDY34308	Canola	cytosol	65.65	64.75
GSMUA_Achr9P07620_001	Banana	plastid	63.16	61.96
CDY20302	Canola	cytosol	44.88	61.36
CDY51485	Canola	cytosol	49.86	61.22
CDY28238	Canola	cytosol	49.58	60.88
CDX72285	Canola	cytosol	49.58	60.88
CDY23273	Canola	cytosol	49.31	60.54
CDY13406	Canola	cytosol	49.31	60.54
CDX68717	Canola	cytosol	49.31	60.54
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.5	60.49
Os12t0286600-01	Rice	cytosol, plastid	61.77	59.15
Zm00001d030601_P001	Maize	plastid	60.11	59.13
CDY55247	Canola	cytosol	47.37	58.16
CDY34778	Canola	cytosol	47.09	57.82
CDY20301	Canola	cytosol	47.09	57.63
CDY27016	Canola	plastid	54.02	57.02
CDY51065	Canola	plastid	54.02	56.69
CDY46139	Canola	cytosol	39.06	55.95
CDX86348	Canola	cytosol, nucleus, plastid	59.0	55.76
CDX85290	Canola	cytosol, nucleus, plastid	58.73	55.5
CDY35777	Canola	cytosol	57.06	54.64
CDX92650	Canola	cytosol	65.1	54.15
CDX98113	Canola	plastid	52.63	52.2
CDY56180	Canola	plastid	52.35	52.07
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	45.15	49.85
CDY11031	Canola	cytosol, plastid	32.96	49.79
CDY35552	Canola	plastid	45.98	47.56
CDY53272	Canola	plastid	17.45	40.13
CDY12257	Canola	plastid	44.6	39.17
CDY22593	Canola	plastid	44.32	38.93
CDY43012	Canola	plastid	45.98	38.52
CDY45906	Canola	cytosol	23.27	37.67

Protein Annotations

EnsemblPlants:CDY28862	EnsemblPlantsGene:GSBRNA2T00041541001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	ProteinID:CDY28668.1	ProteinID:CDY28862	ProteinID:CDY28862.1
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0004EF214A	UniProt:A0A078GUT7	MapMan:35.2	:

Description

BnaC06g26500DBnaC06g26500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUT7]

Coordinates

chrLK032227:+:221421..223695

Molecular Weight (calculated)

41201.1 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.583

Length

361 amino acids

Sequence
(BLAST)

001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLAPFPH RENVEIHKLQ TRRGTEIMAM YVRHPMATST LLYSHGNATD LGQMYELFIE LGIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETYGSKQED VIFYGQSVGS GPTLHLASRF PLLRAVVLHS PILSGLRVMY AVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEIVDCCHG KQLWELCKDK YEPLWVEGGN HCDLEQYPEY MRHLKQFITT VERLPSRSSS SSSGGVRDDG PTRRRSVDRR EKPRQSTERK
301: PLPPKSQWKK SSSKLRISFD HHHLDRSRRS LDCHDKTRKS IDHSHQVERG RKSVDRVGSE L

Best Arabidopsis Sequence Match ( AT3G01690.1 )
(BLAST)

001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLSPFPH RENVEIVKLR TRRGTEIVGM YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETFGSKQEG VILYGQSVGS GPTLDLASRL PQLRAVVLHS PILSGLRVMY SVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEVVDCSHG KQLWELCKDK YEPLWVKGGN HCDLEHYPEY IRHLKKFIAT VERLPCPRMS SDQSERVRDA PPRRSMDRRV KPRQSTERRE
301: KEKPPKSQSK MSSSSSKLKI SFDQLDRSRR SVDCHEKTRK SVDQIERGRK SVDRLDRVRS E

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9S7U7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.