CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX90305
CDY00020
CDY12116
CDY22394
CDY57012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01690.1	CDX72718	AT4G39050.1	21798944
AT3G01690.1	CDX90305	AT4G39050.1	21798944
AT3G01690.1	CDY12116	AT4G39050.1	21798944
AT3G01690.1	CDY22394	AT4G39050.1	21798944
AT3G01690.1	CDY00020	AT5G28900.1	21798944
AT3G01690.1	CDY57012	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28862	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	100.0	95.29
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	100.0	95.29
AT3G01690.1	Thale cress	cytosol, plastid	85.76	81.72
CDY37505	Canola	cytosol, extracellular	15.7	80.6
CDY37504	Canola	cytosol	17.44	78.95
CDX91066	Canola	plastid	72.67	76.22
CDX69584	Canola	endoplasmic reticulum	80.52	74.86
CDY09851	Canola	plastid	80.23	74.59
CDX77081	Canola	plastid	44.77	72.99
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	77.03	72.01
KRH07089	Soybean	cytosol	76.16	71.2
KRH58237	Soybean	cytosol	74.71	70.03
KRG93968	Soybean	cytosol	74.42	69.75
Solyc02g067920.2.1	Tomato	cytosol	74.71	69.46
PGSC0003DMT400017818	Potato	cytosol	74.13	68.73
CDX85599	Canola	cytosol	50.87	67.05
CDY31930	Canola	cytosol	12.21	65.62
GSMUA_Achr9P02010_001	Banana	plastid	69.19	64.85
GSMUA_Achr3P17130_001	Banana	plastid	68.6	64.31
CDY03421	Canola	cytosol	66.28	63.51
CDY34308	Canola	cytosol	67.15	63.11
GSMUA_Achr8P28640_001	Banana	plastid	67.15	62.94
CDY20302	Canola	cytosol	47.09	61.36
GSMUA_Achr9P07620_001	Banana	plastid	64.83	60.6
CDY51485	Canola	cytosol	51.74	60.54
CDY28238	Canola	cytosol	51.45	60.2
CDX72285	Canola	cytosol	51.45	60.2
CDY23273	Canola	cytosol	51.16	59.86
CDY13406	Canola	cytosol	51.16	59.86
CDX68717	Canola	cytosol	51.16	59.86
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.08	59.13
CDY55247	Canola	cytosol	49.42	57.82
Zm00001d030601_P001	Maize	plastid	61.63	57.77
CDY34778	Canola	cytosol	49.13	57.48
Os12t0286600-01	Rice	cytosol, plastid	62.79	57.29
CDY20301	Canola	cytosol	49.13	57.29
CDY27016	Canola	plastid	56.4	56.73
CDY51065	Canola	plastid	56.4	56.4
CDY46139	Canola	cytosol	40.7	55.56
CDX86348	Canola	cytosol, nucleus, plastid	60.17	54.19
CDX85290	Canola	cytosol, nucleus, plastid	59.88	53.93
CDY35777	Canola	cytosol	58.14	53.05
CDX92650	Canola	cytosol	66.28	52.53
CDX98113	Canola	plastid	54.36	51.37
CDY56180	Canola	plastid	54.07	51.24
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	45.35	47.71
CDY35552	Canola	plastid	47.67	46.99
CDY11031	Canola	cytosol, plastid	32.56	46.86
CDY53272	Canola	plastid	18.31	40.13
CDY12257	Canola	plastid	46.22	38.69
CDY22593	Canola	plastid	45.93	38.44
CDY43012	Canola	plastid	47.67	38.05
CDY45906	Canola	cytosol	22.67	34.98

Protein Annotations

EnsemblPlants:CDY32850	EnsemblPlantsGene:GSBRNA2T00052964001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:IPR029058	PANTHER:PTHR12277
PANTHER:PTHR12277:SF118	ProteinID:CDY32850	ProteinID:CDY32850.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0004EDCEFA
UniProt:A0A078H2K5	MapMan:35.2	:	:	:	:

Description

BnaC08g02720DBnaC08g02720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2K5]

Coordinates

chrLK032300:-:412328..414602

Molecular Weight (calculated)

39120.7 Da

IEP (calculated)

8.448

GRAVY (calculated)

-0.495

Length

344 amino acids

Sequence
(BLAST)

001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLAPFPH RENVEIHKLQ TRRGTEIMAM YVRHPMATST LLYSHGNATD LGQMYELFIE LGIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETYGSKQED VIFYGQSVGS GPTLHLASRF PLLRAVVLHS PILSGLRVMY AVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEIVDCCHG KQLWELCKDK YEPLWVEGGN HCDLEQYPEY MRHLKQFITT VERLPSRSSS SSSGGPRQST ERKPLPPKSQ WKKSSSKLRI
301: SFDHHHLDRS RRSLDCHDKT RKSIDHSHQV ERGRKSVDRV GSEL

Best Arabidopsis Sequence Match ( AT3G01690.1 )
(BLAST)

001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLSPFPH RENVEIVKLR TRRGTEIVGM YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETFGSKQEG VILYGQSVGS GPTLDLASRL PQLRAVVLHS PILSGLRVMY SVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEVVDCSHG KQLWELCKDK YEPLWVKGGN HCDLEHYPEY IRHLKKFIAT VERLPCPRMS SDQSERVRDA PPRRSMDRRV KPRQSTERRE
301: KEKPPKSQSK MSSSSSKLKI SFDQLDRSRR SVDCHEKTRK SVDQIERGRK SVDRLDRVRS E

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9S7U7]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.