Factsheet for VIT_17s0000g09740.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039199	Potato	cytosol	81.91	85.44
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	81.14	85.33
Solyc03g111770.2.1	Tomato	cytosol	81.65	85.18
KRH54278	Soybean	endoplasmic reticulum	78.81	80.05
KRH63667	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	77.78	79.21
CDY03421	Canola	cytosol	73.13	78.83
AT4G24760.1	Thale cress	cytosol, nucleus, plastid	73.64	78.08
Bra013831.1-P	Field mustard	cytosol	73.13	77.32
CDY34308	Canola	cytosol	73.13	77.32
GSMUA_Achr3P17130_001	Banana	plastid	71.32	75.2
GSMUA_Achr9P02010_001	Banana	plastid	71.32	75.2
GSMUA_Achr8P28640_001	Banana	plastid	70.28	74.11
GSMUA_Achr9P07620_001	Banana	plastid	66.67	70.11
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.41	70.03
Os12t0286600-01	Rice	cytosol, plastid	67.96	69.76
Zm00001d030601_P001	Maize	plastid	65.37	68.94
VIT_11s0149g00410.t01	Wine grape	cytosol	35.92	67.15
VIT_01s0010g00670.t01	Wine grape	plastid	63.31	64.47
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.59	64.04
CDX92650	Canola	cytosol	71.58	63.82
VIT_02s0012g02180.t01	Wine grape	mitochondrion, vacuole	32.56	61.16
VIT_11s0206g00050.t01	Wine grape	cytosol	37.21	60.0
VIT_14s0083g00800.t01	Wine grape	plastid	65.37	57.5
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	48.06	56.88
Bra019211.1-P	Field mustard	nucleus	70.54	49.46
VIT_19s0015g01840.t01	Wine grape	plasma membrane	22.48	31.07

Protein Annotations

EntrezGene:100267319	wikigene:100267319	Gene3D:3.40.50.1820	MapMan:35.2	InterPro:AB_hydrolase	ProteinID:CCB42918
ProteinID:CCB42918.1	ncoils:Coil	UniProt:F6GTQ2	EMBL:FN594950	InterPro:Hydrolase_4	InterPro:IPR029058
EntrezGene:LOC100267319	wikigene:LOC100267319	PFAM:PF12146	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	SUPFAM:SSF53474
TIGR:TC53775	UniParc:UPI00019851AC	ArrayExpress:VIT_17s0000g09740	EnsemblPlantsGene:VIT_17s0000g09740	EnsemblPlants:VIT_17s0000g09740.t01	unigene:Vvi.3235
RefSeq:XP_002278591	RefSeq:XP_002278591.1	RefSeq:XP_010663064.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:11600235..11607173

Molecular Weight (calculated)

44416.9 Da

IEP (calculated)

9.563

GRAVY (calculated)

-0.677

Length

387 amino acids

Sequence
(BLAST)

001: MGGVTSSMAA KLAFFPPNPP SYKLITDDAT GLLLFNHFPH RENVDILKLP TRRGTEIVAL YVRYPMATST LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPSEHNTY ADIEAAYKCL EESFGAKQED IILYGQSVGS GPTLDLAARL PRLRAVVLHS PILSGLRVMY PVKRTYWFDI YKNIDKIPLV
201: QCPVLVIHGT ADEVVDCSHG KQLWELCKEK YEPLWLKGGN HCDLELYPEY IKHLKKFIST VEKSPSRRSS ARRSVDRPEY SRKSTDCYEA PRKSTDQAPR
301: KSTDQAPRKS TDRRDKPRRS TDRPEKLKLY DYKSNDVDKL EKLRTSLDQV ERSRRSVEYN DKSRRSINQQ LERARKSVDW LDRIRAG

Best Arabidopsis Sequence Match ( AT4G24760.1 )
(BLAST)

001: MGGVTSSMAA KLAFFPPNPP SYKLVRDETT ELFLMSPFPH RENVDILRLP TRRGTEIVAM YIRYPMAVTT LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPTEQNTY ADIEAAYKCL EENYGAKQEN IILYGQSVGS GPTVDLAARL PRLRASILHS PILSGLRVMY PVKRTYWFDI YKNIDKITLV
201: RCPVLVIHGT ADDVVDFSHG KQLWELCQEK YEPLWLKGGN HCDLELFPEY IGHLKKFVSA VEKSASKRNS SFSRRSMEGC EQPPRHSVDA PRKSKDGREK
301: PRKSIDRLRF QGYKLSHIEK PEKLKVPFEE MERSRRSVDI YRDKSQPMER ARKSVDWLDR SRATE

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SB70]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.