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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34308 Canola cytosol 94.79 94.54
Bra013831.1-P Field mustard cytosol 94.79 94.54
CDY03421 Canola cytosol 92.88 94.43
CDX92650 Canola cytosol 92.88 78.11
Solyc03g111770.2.1 Tomato cytosol 76.99 75.74
PGSC0003DMT400039199 Potato cytosol 76.99 75.74
VIT_17s0000g09740.t01 Wine grape cytosol, endoplasmic reticulum, nucleus 78.08 73.64
KRH54278 Soybean endoplasmic reticulum 75.89 72.7
GSMUA_Achr9P02010_001 Banana plastid 72.6 72.21
GSMUA_Achr3P17130_001 Banana plastid 72.05 71.66
GSMUA_Achr8P28640_001 Banana plastid 72.05 71.66
KRH63667 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 74.52 71.58
AT5G14390.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 70.68 69.92
AT3G01690.1 Thale cress cytosol, plastid 67.67 68.42
GSMUA_Achr9P07620_001 Banana plastid 67.67 67.12
OQU79022 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 67.12 66.76
Os12t0286600-01 Rice cytosol, plastid 68.77 66.58
AT1G66900.1 Thale cress cytosol 49.59 66.54
Zm00001d030601_P001 Maize plastid 64.93 64.58
Bra019211.1-P Field mustard nucleus 92.05 60.87
AT5G38220.1 Thale cress cytosol 55.89 60.71
AT4G31020.2 Thale cress cytosol 47.67 59.18
AT2G24320.2 Thale cress cytosol 47.12 58.7
AT3G30380.1 Thale cress cytosol 60.0 54.89
GSMUA_Achr9P22710_001 Banana endoplasmic reticulum, golgi 48.22 53.82
AT1G13610.1 Thale cress plastid 52.33 53.35
AT1G32190.1 Thale cress plastid 43.01 37.2
Protein Annotations
Gene3D:3.40.50.1820MapMan:35.2EntrezGene:828578InterPro:AB_hydrolaseProteinID:AEE84953.1ArrayExpress:AT4G24760
EnsemblPlantsGene:AT4G24760RefSeq:AT4G24760TAIR:AT4G24760RefSeq:AT4G24760-TAIR-GEnsemblPlants:AT4G24760.1TAIR:AT4G24760.1
EMBL:AY084912EMBL:BT000963ProteinID:CAA22987.1ProteinID:CAB79386.1ncoils:CoilGO:GO:0003674
GO:GO:0003824GO:GO:0016787InterPro:Hydrolase_4InterPro:IPR029058RefSeq:NP_194207.1PFAM:PF12146
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR12277
PANTHER:PTHR12277:SF118UniProt:Q9SB70MEROPS:S09.A04SUPFAM:SSF53474UniParc:UPI000005ECACSEG:seg
Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SB70]
Coordinates
chr4:-:12761233..12763900
Molecular Weight (calculated)
41938.4 Da
IEP (calculated)
9.354
GRAVY (calculated)
-0.553
Length
365 amino acids
Sequence
(BLAST)
001: MGGVTSSMAA KLAFFPPNPP SYKLVRDETT ELFLMSPFPH RENVDILRLP TRRGTEIVAM YIRYPMAVTT LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPTEQNTY ADIEAAYKCL EENYGAKQEN IILYGQSVGS GPTVDLAARL PRLRASILHS PILSGLRVMY PVKRTYWFDI YKNIDKITLV
201: RCPVLVIHGT ADDVVDFSHG KQLWELCQEK YEPLWLKGGN HCDLELFPEY IGHLKKFVSA VEKSASKRNS SFSRRSMEGC EQPPRHSVDA PRKSKDGREK
301: PRKSIDRLRF QGYKLSHIEK PEKLKVPFEE MERSRRSVDI YRDKSQPMER ARKSVDWLDR SRATE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.