Factsheet for TraesCS6D01G135100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G174200.1	Wheat	golgi	99.02	99.02
TraesCS6A01G145800.1	Wheat	cytosol	99.02	99.02
HORVU0Hr1G015750.1	Barley	cytosol	98.04	98.04
TraesCS7D01G510600.1	Wheat	cytosol	95.1	95.1
EES06388	Sorghum	cytosol	92.65	92.65
GSMUA_Achr4P01890_001	Banana	cytosol	92.16	92.16
Os02t0182500-01	Rice	cytosol	91.67	91.67
GSMUA_Achr9P13190_001	Banana	cytosol	85.29	91.1
KRH17983	Soybean	endoplasmic reticulum	89.71	89.71
KRH16390	Soybean	nucleus	89.71	89.71
KRH64671	Soybean	cytosol	87.75	87.75
Bra038565.1-P	Field mustard	cytosol	87.75	87.75
CDY04667	Canola	cytosol	87.75	87.75
CDY08181	Canola	cytosol	87.75	87.75
Zm00001d015526_P002	Maize	cytosol	90.69	87.26
AT1G21720.1	Thale cress	cytosol	87.25	87.25
Bra012292.1-P	Field mustard	cytosol	87.25	87.25
CDY00398	Canola	extracellular	87.25	87.25
Bra016408.1-P	Field mustard	cytosol	87.25	87.25
CDY67773	Canola	extracellular	81.37	86.91
Bra008308.1-P	Field mustard	cytosol	81.37	86.91
CDY38347	Canola	extracellular	81.37	86.91
CDY01316	Canola	cytosol	87.25	86.41
CDY71260	Canola	cytosol	80.88	86.39
Solyc04g009410.2.1	Tomato	extracellular	86.27	86.27
AT1G77440.1	Thale cress	cytosol	86.27	86.27
PGSC0003DMT400082475	Potato	cytosol	85.78	85.78
KRH53242	Soybean	cytosol	76.96	85.33
VIT_18s0001g02260.t01	Wine grape	cytosol	84.8	84.8
CDY70670	Canola	cytosol, mitochondrion	60.78	77.5
CDY40893	Canola	mitochondrion	61.27	75.76
CDY40889	Canola	mitochondrion	27.45	68.29
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	82.84	40.24
TraesCS5D01G292900.1	Wheat	cytosol	23.04	21.27

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS6D01G135100	EnsemblPlants:TraesCS6D01G135100.1	TIGR:cd03759	:

Description

No Description!

Coordinates

chr6D:+:103009079..103011788

Molecular Weight (calculated)

22800.6 Da

IEP (calculated)

5.093

GRAVY (calculated)

-0.028

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTVATDFQ RVFKIHGKLY IGLSGLATDV QTLYQRLAFK HKLYQLREER DMKPETFASL VSALLYEKRF
101: GPYFCQPIIA GLGEKDQPFI CTMDCIGAKE LAKDFVVSGT ASESLYGACE SMYKPDMEPE ELFETISQAL LSSVDRDCLS GWGGYVLIVT PTEVQERVLK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.