Factsheet for Bra038565.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012292.1-P	Field mustard	cytosol	99.51	99.51
Bra016408.1-P	Field mustard	cytosol	99.51	99.51
AT1G21720.1	Thale cress	cytosol	99.02	99.02
CDY01316	Canola	cytosol	99.51	98.54
Bra008308.1-P	Field mustard	cytosol	91.67	97.91
Zm00001d036756_P001	Maize	cytosol	45.1	92.93
Solyc04g009410.2.1	Tomato	extracellular	92.65	92.65
KRH17983	Soybean	endoplasmic reticulum	92.16	92.16
KRH16390	Soybean	nucleus	92.16	92.16
PGSC0003DMT400082475	Potato	cytosol	91.67	91.67
VIT_18s0001g02260.t01	Wine grape	cytosol	90.69	90.69
EES06388	Sorghum	cytosol	88.24	88.24
Os06t0643100-01	Rice	plasma membrane	88.24	88.24
TraesCS6D01G135100.1	Wheat	plastid	87.75	87.75
TraesCS6B01G174200.1	Wheat	golgi	87.75	87.75
TraesCS6A01G145800.1	Wheat	cytosol	87.75	87.75
EER90101	Sorghum	cytosol	87.75	87.75
HORVU0Hr1G015750.1	Barley	cytosol	87.25	87.25
Os02t0182500-01	Rice	cytosol	86.76	86.76
TraesCS7D01G510600.1	Wheat	cytosol	86.76	86.76
TraesCS7A01G520800.1	Wheat	golgi	86.27	86.27
TraesCS7B01G437600.1	Wheat	cytosol	86.27	86.27
Zm00001d015526_P002	Maize	cytosol	86.76	83.49
Zm00001d046600_P001	Maize	cytosol	85.29	75.65
Zm00001d036758_P002	Maize	extracellular	42.16	74.78
HORVU6Hr1G065260.1	Barley	cytosol	17.65	72.0
HORVU7Hr1G115980.1	Barley	plastid	84.8	65.28
GSMUA_Achr10P...	Banana	extracellular	12.75	47.27
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	92.65	45.0
Bra014468.1-P	Field mustard	cytosol	27.45	25.11
Bra007565.1-P	Field mustard	cytosol	26.96	24.66
Bra003428.1-P	Field mustard	cytosol	26.96	24.66

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra038565	EnsemblPlants:Bra038565.1	EnsemblPlants:Bra038565.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4FBU9
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104
InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0001EEB0C9

Description

AT1G21720 (E=9e-114) PBC1 | PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase

Coordinates

chrA09:-:5367421..5368997

Molecular Weight (calculated)

22799.5 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.045

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGEDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEIKERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.