Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92530 | Canola | cytosol | 97.55 | 96.36 |
| AT5G19440.1 | Thale cress | plastid | 89.57 | 89.57 |
| CDY43911 | Canola | cytosol | 75.46 | 75.69 |
| CDY65726 | Canola | cytosol | 75.15 | 75.38 |
| CDY03618 | Canola | cytosol | 75.15 | 75.38 |
| CDY22576 | Canola | cytosol | 74.23 | 74.46 |
| CDY68009 | Canola | cytosol, endoplasmic reticulum, golgi | 59.2 | 59.94 |
| CDX94966 | Canola | golgi, mitochondrion, peroxisome, plastid | 57.36 | 58.07 |
| CDY45844 | Canola | cytosol, golgi, peroxisome | 57.36 | 57.54 |
| CDY72415 | Canola | cytosol, endoplasmic reticulum, peroxisome | 57.36 | 57.54 |
| CDY64747 | Canola | extracellular, golgi, mitochondrion, plastid | 57.06 | 57.41 |
| CDX94965 | Canola | golgi | 56.44 | 56.62 |
| CDX94967 | Canola | plasma membrane | 53.68 | 54.35 |
| CDX94968 | Canola | endoplasmic reticulum, golgi, plastid | 53.99 | 53.99 |
| CDY35052 | Canola | cytosol | 44.48 | 52.54 |
| CDY64748 | Canola | cytosol | 56.75 | 49.47 |
| CDY57397 | Canola | cytosol, endoplasmic reticulum, peroxisome | 47.85 | 48.3 |
| CDX81743 | Canola | cytosol | 50.31 | 48.24 |
| CDY63972 | Canola | cytosol | 48.77 | 48.04 |
| CDY32979 | Canola | cytosol, endoplasmic reticulum, peroxisome | 47.55 | 47.99 |
| CDY33365 | Canola | cytosol | 50.31 | 47.81 |
| CDY52857 | Canola | cytosol | 50.31 | 47.81 |
| CDY64860 | Canola | cytosol | 48.47 | 47.73 |
| CDY39941 | Canola | cytosol | 48.16 | 47.29 |
| CDX87345 | Canola | cytosol | 48.16 | 47.29 |
| CDY24810 | Canola | cytosol | 45.71 | 47.0 |
| CDX75502 | Canola | cytosol, extracellular, plastid | 45.71 | 46.71 |
| CDY41656 | Canola | cytosol, plastid, vacuole | 45.09 | 46.37 |
| CDX69139 | Canola | cytosol, extracellular, plastid | 45.09 | 46.08 |
| CDY38590 | Canola | cytosol | 42.02 | 42.68 |
| CDX69634 | Canola | cytosol | 42.02 | 42.68 |
| CDX96012 | Canola | cytosol, nucleus, peroxisome | 40.8 | 41.43 |
| CDY09372 | Canola | cytosol | 40.18 | 40.81 |
| CDY15830 | Canola | cytosol | 39.57 | 40.19 |
| CDX84989 | Canola | cytosol | 38.65 | 39.25 |
| CDY42105 | Canola | cytosol, plastid | 38.04 | 38.63 |
| CDX84988 | Canola | cytosol | 34.66 | 37.05 |
| CDY42108 | Canola | cytosol | 23.31 | 32.34 |
Protein Annotations
| EnsemblPlants:CDY14000 | EnsemblPlantsGene:GSBRNA2T00078517001 | Gene3D:3.40.50.720 | GO:A0A078FHS0 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0050662 | InterPro:Epimerase_deHydtase | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF407 |
| PFAM:PF01370 | ProteinID:CDY14000 | ProteinID:CDY14000.1 | SUPFAM:SSF51735 | UniParc:UPI0004EC9D11 | UniProt:A0A078FHS0 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC09g38260DBnaC09g38260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHS0]
Coordinates
chrLK032039:+:753286..755176
Molecular Weight (calculated)
35652.6 Da
IEP (calculated)
6.400
GRAVY (calculated)
-0.091
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSGEGKVV CVTGASGYIA SWLVKSLLSR GYTVKASVRD PSDPKKTQHL LSLDGAKERL HLFKADLLEE GSFDSAIDGC EGVFHTASPF YHDVKDPQAE
101: LIDPAVKGTL NVLNSCTKAS SVKRVVVTSS MAAVAYNGKP LTPDVTVDET WFSDPEVCKT SKMWYVLSKT LAEDAAWKFA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNFINGAKT FSNSTFGWVS VKDVANAHIQ AYEIPSANGR YCMVERVLHH SEIVNILRQL YPNLQLPESC ADENPYVPTY QVSKEKIKSL
301: GIDYIPLEVS IKETVESLKE KGFINF
101: LIDPAVKGTL NVLNSCTKAS SVKRVVVTSS MAAVAYNGKP LTPDVTVDET WFSDPEVCKT SKMWYVLSKT LAEDAAWKFA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNFINGAKT FSNSTFGWVS VKDVANAHIQ AYEIPSANGR YCMVERVLHH SEIVNILRQL YPNLQLPESC ADENPYVPTY QVSKEKIKSL
301: GIDYIPLEVS IKETVESLKE KGFINF
001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
Arabidopsis Description
At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.