CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94967	Canola	plasma membrane	86.2	87.27
CDX94965	Canola	golgi	80.98	81.23
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	80.67	81.17
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	79.14	80.12
AT1G09490.1	Thale cress	golgi	75.15	76.09
CDY64748	Canola	cytosol	79.75	69.52
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	65.95	66.77
AT1G09480.1	Thale cress	cytosol	73.93	65.31
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	65.03	65.23
CDY45844	Canola	cytosol, golgi, peroxisome	63.8	64.0
TraesCS4A01G331600.1	Wheat	cytosol, golgi, plastid	39.88	59.63
CDY14000	Canola	cytosol	53.99	53.99
Solyc01g087640.2.1	Tomato	cytosol	53.37	53.05
GSMUA_Achr8P24060_001	Banana	plastid	52.45	52.94
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	53.07	52.91
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	52.76	52.6
CDX92530	Canola	cytosol	53.07	52.42
CDY03618	Canola	cytosol	52.15	52.31
CDY65726	Canola	cytosol	52.15	52.31
CDY22576	Canola	cytosol	51.84	52.0
CDY43911	Canola	cytosol	51.84	52.0
GSMUA_Achr8P24070_001	Banana	golgi, plastid	51.23	51.7
GSMUA_Achr8P24040_001	Banana	plastid	50.61	51.08
TraesCS4A01G331900.2	Wheat	golgi, unclear	51.53	50.91
TraesCS5D01G540800.1	Wheat	plastid	51.53	50.91
GSMUA_Achr4P10200_001	Banana	cytosol, golgi, plastid	50.92	50.61
TraesCS5B01G547200.1	Wheat	unclear	50.61	50.0
TraesCS5B01G547000.1	Wheat	golgi	50.31	49.7
TraesCS5D01G541100.1	Wheat	golgi	50.31	49.7
Os01t0528800-01	Rice	cytosol, endoplasmic reticulum, plastid	50.31	48.81
KXG30065	Sorghum	plastid	49.69	48.5
HORVU5Hr1G122150.1	Barley	plastid	53.07	48.06
TraesCS4D01G343400.1	Wheat	cytosol	49.39	47.49
CDY35052	Canola	cytosol	39.57	46.74
TraesCS5A01G517000.1	Wheat	mitochondrion	50.0	45.15
CDY39941	Canola	cytosol	44.17	43.37
CDX87345	Canola	cytosol	44.17	43.37
CDX81743	Canola	cytosol	45.09	43.24
CDY63972	Canola	cytosol	43.87	43.2
Zm00001d015956_P002	Maize	plastid	50.61	43.08
CDY64860	Canola	cytosol	43.56	42.9
CDY33365	Canola	cytosol	45.09	42.86
HORVU4Hr1G085100.1	Barley	cytosol	48.77	42.74
CDY52857	Canola	cytosol	44.79	42.57
TraesCS5B01G546700.1	Wheat	peroxisome, plastid	29.45	42.48
CDY24810	Canola	cytosol	41.1	42.27
CDX75502	Canola	cytosol, extracellular, plastid	40.49	41.38
CDX69139	Canola	cytosol, extracellular, plastid	39.88	40.75
CDY41656	Canola	cytosol, plastid, vacuole	39.26	40.38
CDY57397	Canola	cytosol, endoplasmic reticulum, peroxisome	39.26	39.63
CDY32979	Canola	cytosol, endoplasmic reticulum, peroxisome	38.96	39.32
CDY38590	Canola	cytosol	38.65	39.25
CDX69634	Canola	cytosol	38.34	38.94
CDX96012	Canola	cytosol, nucleus, peroxisome	38.04	38.63
CDY09372	Canola	cytosol	35.28	35.83
CDY42105	Canola	cytosol, plastid	34.36	34.89
CDX84989	Canola	cytosol	34.36	34.89
CDY15830	Canola	cytosol	33.74	34.27
CDX84988	Canola	cytosol	30.98	33.11
CDY42108	Canola	cytosol	19.33	26.81

Protein Annotations

EnsemblPlants:CDX94968	EnsemblPlantsGene:GSBRNA2T00100458001	Gene3D:3.40.50.720	GO:A0A078E6G9	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF492
PFAM:PF01370	ProteinID:CDX94968	ProteinID:CDX94968.1	SUPFAM:SSF51735	UniParc:UPI0004EEF58E	MapMan:35.1

Description

BnaC05g07030D

Coordinates

chrLK031886:-:486147..488251

Molecular Weight (calculated)

36050.0 Da

IEP (calculated)

5.784

GRAVY (calculated)

0.088

Length

326 amino acids

Sequence
(BLAST)

001: MNSEGGKVVC VTGASGYVAS WIVKLLLLRG YTVRATVRNP SDTAKTEHLL ALEGAKERLK VFKADLLEEF SFEQAIQGCD AVFHTASPVK FTVMDPQTEL
101: IDPAVKGTID VLDTCRKISS VKRVILTSSM AAVLIRQPPL EPNDVVDETF FSDPSVCIES KLWYQLSKTL AENVAWQFAK DNGMDMVVIN PGYIIGPLLL
201: PTLNLSVEII VDMVKGKNPL NCRYYRFVDV RDVALAHVKA LESPSANGRY IISGQSVTIN HIKETMRELF PDLCIDDMNG EGLMDGINCT MCVDKVKNLG
301: VEFTPLKSSL RDTIISLKEK MSLVRV

Best Arabidopsis Sequence Match ( AT1G09490.1 )
(BLAST)

001: MNCGGKVVCV TGASGYIASW IVKLLLLRGY TVNATVRDPK DKKKTEHLLA LDGAKERLKL FKADLLEESS FDQAIDGCDA VFHTASPVLF TVTDPQTELI
101: DPALKGTINV LNTCKQVSSV KRVILTSSTA AVLSRQPPIG PNDLVDETFF SDPSLCRETK NWYSLSKILA ENAAWQFAKD NGIDMVVLNP GFICGPLLQP
201: TLNMSVELIV DFINGKNPFN KRYYRFSDVR DVALVHIKAL ETPSANGRYI IDGPNMSVND IIDILRKLFP DLSIADTNEE SEMNEMICQV CVEKVKNLGV
301: EFTPMKSSLR DTIVSLKEKC LL

Arabidopsis Description

At1g09490/F14J9_15 [Source:UniProtKB/TrEMBL;Acc:O80532]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.