Factsheet for TraesCS5D01G541100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G547200.1	Wheat	unclear	98.48	98.48
TraesCS4A01G331600.1	Wheat	cytosol, golgi, plastid	63.94	96.79
TraesCS5B01G546700.1	Wheat	peroxisome, plastid	65.15	95.13
TraesCS5D01G540800.1	Wheat	plastid	93.03	93.03
HORVU5Hr1G122150.1	Barley	plastid	93.64	85.83
Os01t0528800-01	Rice	cytosol, endoplasmic reticulum, plastid	83.33	81.85
KXG30065	Sorghum	plastid	80.0	79.04
GSMUA_Achr8P24070_001	Banana	golgi, plastid	70.61	72.14
GSMUA_Achr8P24040_001	Banana	plastid	69.39	70.9
GSMUA_Achr8P24060_001	Banana	plastid	68.48	69.97
TraesCS4D01G343400.1	Wheat	cytosol	71.52	69.62
Zm00001d015956_P002	Maize	plastid	80.61	69.45
GSMUA_Achr4P10200_001	Banana	cytosol, golgi, plastid	68.18	68.6
VIT_03s0110g00350.t01	Wine grape	cytosol	66.67	67.9
VIT_13s0064g00290.t01	Wine grape	cytosol, extracellular, plastid	43.03	65.74
VIT_13s0047g00940.t01	Wine grape	cytosol	62.73	64.09
VIT_13s0047g00540.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	61.82	63.16
VIT_13s0064g00270.t01	Wine grape	cytosol, endoplasmic reticulum	61.21	61.96
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	59.7	60.24
VIT_13s0101g00240.t01	Wine grape	cytosol	46.67	59.69
VIT_13s0067g00460.t01	Wine grape	endoplasmic reticulum	58.79	59.51
VIT_13s0067g00530.t01	Wine grape	endoplasmic reticulum	58.79	59.51
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	58.79	59.33
VIT_15s0107g00210.t01	Wine grape	extracellular, plastid	59.7	57.1
VIT_13s0101g00250.t01	Wine grape	cytosol	48.48	56.94
Solyc01g087640.2.1	Tomato	cytosol	55.76	56.1
VIT_13s0067g00680.t01	Wine grape	cytosol	46.36	55.23
AT1G66800.1	Thale cress	peroxisome, plasma membrane, plastid	52.73	54.55
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	53.03	54.35
Bra031666.1-P	Field mustard	golgi	51.82	54.11
Bra038342.1-P	Field mustard	cytosol, golgi, peroxisome	53.03	53.85
CDY45844	Canola	cytosol, golgi, peroxisome	53.03	53.85
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	52.73	53.54
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	52.12	53.42
AT1G09510.1	Thale cress	cytosol, plastid, vacuole	52.12	53.42
CDX94965	Canola	golgi	52.12	52.92
VIT_13s0067g00690.t01	Wine grape	cytosol	49.39	52.75
AT1G09490.1	Thale cress	golgi	51.21	52.48
Bra020021.1-P	Field mustard	golgi	51.21	52.48
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	51.52	52.47
AT1G09500.1	Thale cress	endoplasmic reticulum	51.52	52.31
Bra020020.1-P	Field mustard	extracellular, golgi	50.61	51.86
CDX94967	Canola	plasma membrane	50.61	51.86
Bra020019.1-P	Field mustard	extracellular, golgi	51.21	51.84
CDX94968	Canola	endoplasmic reticulum, golgi, plastid	49.7	50.31
VIT_13s0047g00550.t01	Wine grape	mitochondrion, vacuole	52.42	50.14
AT1G09480.1	Thale cress	cytosol	51.52	46.07
CDY64748	Canola	cytosol	51.52	45.45
TraesCS5D01G232400.1	Wheat	cytosol, peroxisome, plastid	47.58	44.73
TraesCS7D01G150500.1	Wheat	cytosol	44.85	43.4
TraesCS7D01G248800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.03	43.16
TraesCS7D01G150600.1	Wheat	cytosol	44.55	42.86
TraesCS5D01G486300.2	Wheat	cytosol	42.73	42.73
TraesCS5D01G168400.1	Wheat	cytosol	45.15	41.74
TraesCS6D01G365900.1	Wheat	cytosol	42.73	41.72
TraesCS6D01G369500.1	Wheat	peroxisome	43.03	41.52
TraesCS5D01G073300.1	Wheat	cytosol	42.12	41.37
TraesCS5D01G073400.1	Wheat	cytosol	41.82	40.71
TraesCS6D01G366400.1	Wheat	cytosol	40.61	40.24
TraesCS5D01G278800.1	Wheat	mitochondrion	42.12	39.94
TraesCS6D01G365700.1	Wheat	cytosol	41.52	39.71
TraesCS6D01G136600.2	Wheat	extracellular, vacuole	40.91	39.24
TraesCS6D01G366200.1	Wheat	cytosol	40.61	38.84
TraesCS3D01G342200.2	Wheat	cytosol	39.39	37.9
TraesCS3D01G033300.1	Wheat	cytosol	37.27	37.39
TraesCS6D01G366000.1	Wheat	cytosol	40.0	34.29
VIT_13s0047g00990.t01	Wine grape	endoplasmic reticulum	62.42	33.77

Protein Annotations

EnsemblPlants:TraesCS5D01G541100.1	EnsemblPlantsGene:TraesCS5D01G541100	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF407	PFAM:PF01370
SUPFAM:SSF51735	TIGR:cd08958	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5D:+:552036297..552039996

Molecular Weight (calculated)

36397.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.077

Length

330 amino acids

Sequence
(BLAST)

001: MSSGTGKVVC VTGASGYIAS WLVKFLLQRG YTVRATVRDT ADPKKTLHLQ ALDGAKDRLH LFKASLLEEG TFDDAVAGCD CVFHTASPFY HNVKDPKAEL
101: LDPAVNGTLN VLRSCKKASI KRVIVTSSMA AVAYNGKPRT PDVVVDETWF SSAEVCEKNK QWYVLSKTLA EEAAWKYAND NGLEIITINP TMVIGPLLQP
201: TLNTSTEAIL KFINGSSSTY ANFCFGWINV KDVALAHILA YEVPSANGRY CMVERVIHHS DLVKIIHEMY PEFPVPDKCA DDAPFAPIYQ VSKDRIRSLG
301: MELTPLETSL KETIESLREK GFVTSESSHL

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.