Factsheet for TraesCS5D01G540800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G547000.1	Wheat	golgi	98.48	98.48
TraesCS4A01G331900.2	Wheat	golgi, unclear	98.48	98.48
TraesCS5D01G541100.1	Wheat	golgi	93.03	93.03
Os01t0528800-01	Rice	cytosol, endoplasmic reticulum, plastid	85.76	84.23
KXG30065	Sorghum	plastid	83.64	82.63
GSMUA_Achr8P24070_001	Banana	golgi, plastid	72.42	73.99
TraesCS4D01G343400.1	Wheat	cytosol	73.94	71.98
GSMUA_Achr8P24060_001	Banana	plastid	70.0	71.52
GSMUA_Achr8P24040_001	Banana	plastid	69.39	70.9
Zm00001d015956_P002	Maize	plastid	82.12	70.76
GSMUA_Achr4P10200_001	Banana	cytosol, golgi, plastid	69.7	70.12
VIT_03s0110g00350.t01	Wine grape	cytosol	66.67	67.9
VIT_13s0064g00290.t01	Wine grape	cytosol, extracellular, plastid	43.33	66.2
VIT_13s0047g00940.t01	Wine grape	cytosol	63.03	64.4
VIT_13s0047g00540.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	62.12	63.47
VIT_13s0064g00270.t01	Wine grape	cytosol, endoplasmic reticulum	61.52	62.27
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	60.91	61.47
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	60.0	60.55
VIT_13s0101g00240.t01	Wine grape	cytosol	47.27	60.47
VIT_13s0067g00530.t01	Wine grape	endoplasmic reticulum	59.39	60.12
VIT_13s0067g00460.t01	Wine grape	endoplasmic reticulum	59.39	60.12
VIT_13s0101g00250.t01	Wine grape	cytosol	49.39	58.01
VIT_15s0107g00210.t01	Wine grape	extracellular, plastid	60.3	57.68
Solyc01g087640.2.1	Tomato	cytosol	56.06	56.4
Bra031666.1-P	Field mustard	golgi	53.33	55.7
VIT_13s0067g00680.t01	Wine grape	cytosol	46.67	55.6
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	54.24	55.59
AT1G66800.1	Thale cress	peroxisome, plasma membrane, plastid	53.64	55.49
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	53.94	55.28
CDX94965	Canola	golgi	53.64	54.46
Bra020021.1-P	Field mustard	golgi	53.03	54.35
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	53.03	54.01
Bra038342.1-P	Field mustard	cytosol, golgi, peroxisome	53.03	53.85
CDY45844	Canola	cytosol, golgi, peroxisome	53.03	53.85
AT1G09510.1	Thale cress	cytosol, plastid, vacuole	52.42	53.73
VIT_13s0067g00690.t01	Wine grape	cytosol	50.3	53.72
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	52.73	53.54
AT1G09490.1	Thale cress	golgi	52.12	53.42
Bra020019.1-P	Field mustard	extracellular, golgi	52.73	53.37
Bra020020.1-P	Field mustard	extracellular, golgi	51.82	53.11
CDX94967	Canola	plasma membrane	51.52	52.8
AT1G09500.1	Thale cress	endoplasmic reticulum	51.82	52.62
CDX94968	Canola	endoplasmic reticulum, golgi, plastid	50.91	51.53
VIT_13s0047g00550.t01	Wine grape	mitochondrion, vacuole	53.33	51.01
CDY64748	Canola	cytosol	53.33	47.06
AT1G09480.1	Thale cress	cytosol	52.42	46.88
TraesCS5D01G232400.1	Wheat	cytosol, peroxisome, plastid	46.97	44.16
TraesCS5D01G486300.2	Wheat	cytosol	43.03	43.03
TraesCS7D01G248800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	42.73	42.86
TraesCS7D01G150500.1	Wheat	cytosol	43.94	42.52
TraesCS7D01G150600.1	Wheat	cytosol	43.64	41.98
TraesCS6D01G366400.1	Wheat	cytosol	41.21	40.84
TraesCS5D01G073300.1	Wheat	cytosol	41.21	40.48
TraesCS5D01G073400.1	Wheat	cytosol	41.21	40.12
TraesCS5D01G168400.1	Wheat	cytosol	43.33	40.06
TraesCS5D01G278800.1	Wheat	mitochondrion	42.12	39.94
TraesCS6D01G365900.1	Wheat	cytosol	40.61	39.65
TraesCS6D01G369500.1	Wheat	peroxisome	40.91	39.47
TraesCS6D01G365700.1	Wheat	cytosol	40.61	38.84
TraesCS6D01G136600.2	Wheat	extracellular, vacuole	40.3	38.66
TraesCS3D01G033300.1	Wheat	cytosol	38.48	38.6
TraesCS3D01G342200.2	Wheat	cytosol	40.0	38.48
TraesCS6D01G366200.1	Wheat	cytosol	39.7	37.97
VIT_13s0047g00990.t01	Wine grape	endoplasmic reticulum	62.73	33.93
TraesCS6D01G366000.1	Wheat	cytosol	39.09	33.51

Protein Annotations

EnsemblPlants:TraesCS5D01G540800.1	EnsemblPlantsGene:TraesCS5D01G540800	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016616
GO:GO:0055114	InterPro:3Beta_OHSteriod_DH/Estase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF407	PFAM:PF01073
SUPFAM:SSF51735	TIGR:cd08958	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5D:+:551990499..551993929

Molecular Weight (calculated)

36294.6 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.035

Length

330 amino acids

Sequence
(BLAST)

001: MSSGMGKVVC VTGASGYIAS WLVKLLLHRG YTVRATVRDT ADPKKTLHLQ ALDGAKDRLH LFKASLLEEG SFDAAIAGSD CVFHTASPFY HNVKDPKAEL
101: LDPAVNGTLN VLRSCKKASI KRVIITSSMA AVAYNGKPRT PDVVVDETWF SSAEVCEKNE QWYVLSKTLA EEAAWKFAND NGFEIVTINP AMVIGPLLQP
201: TLNTSAEAIL KFINGSSSTY PNFSFGWINV KDVALAHILA YEVPSANGRY CMVERVAHHS EIVKIIHEMY PKFPVPDKCA DDAPFVPIYQ VSKDKIRSLG
301: MELIPLETSL KETIESLREK GFVTSESSHL

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.