Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25769308
unclear: 25769308 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G540800.1 | Wheat | plastid | 98.48 | 98.48 |
| TraesCS5B01G547000.1 | Wheat | golgi | 97.58 | 97.58 |
| TraesCS4A01G331600.1 | Wheat | cytosol, golgi, plastid | 61.52 | 93.12 |
| Os01t0528800-01 | Rice | cytosol, endoplasmic reticulum, plastid | 86.06 | 84.52 |
| KXG30065 | Sorghum | plastid | 84.24 | 83.23 |
| GSMUA_Achr8P24070_001 | Banana | golgi, plastid | 73.03 | 74.61 |
| GSMUA_Achr8P24060_001 | Banana | plastid | 70.61 | 72.14 |
| GSMUA_Achr8P24040_001 | Banana | plastid | 70.0 | 71.52 |
| Zm00001d015956_P002 | Maize | plastid | 82.73 | 71.28 |
| GSMUA_Achr4P10200_001 | Banana | cytosol, golgi, plastid | 70.3 | 70.73 |
| VIT_03s0110g00350.t01 | Wine grape | cytosol | 67.27 | 68.52 |
| TraesCS5A01G517000.1 | Wheat | mitochondrion | 74.24 | 67.87 |
| VIT_13s0064g00290.t01 | Wine grape | cytosol, extracellular, plastid | 43.94 | 67.13 |
| VIT_13s0047g00940.t01 | Wine grape | cytosol | 63.64 | 65.02 |
| VIT_13s0047g00540.t01 | Wine grape | cytosol, endoplasmic reticulum, plastid | 62.73 | 64.09 |
| VIT_13s0064g00270.t01 | Wine grape | cytosol, endoplasmic reticulum | 62.12 | 62.88 |
| VIT_13s0067g00620.t01 | Wine grape | endoplasmic reticulum, golgi | 61.52 | 62.08 |
| VIT_13s0101g00240.t01 | Wine grape | cytosol | 47.88 | 61.24 |
| VIT_13s0067g00590.t01 | Wine grape | endoplasmic reticulum, golgi | 60.61 | 61.16 |
| VIT_13s0067g00460.t01 | Wine grape | endoplasmic reticulum | 60.0 | 60.74 |
| VIT_13s0067g00530.t01 | Wine grape | endoplasmic reticulum | 60.0 | 60.74 |
| VIT_13s0101g00250.t01 | Wine grape | cytosol | 50.0 | 58.72 |
| VIT_15s0107g00210.t01 | Wine grape | extracellular, plastid | 60.91 | 58.26 |
| Solyc01g087640.2.1 | Tomato | cytosol | 56.67 | 57.01 |
| VIT_13s0067g00680.t01 | Wine grape | cytosol | 46.97 | 55.96 |
| Bra031666.1-P | Field mustard | golgi | 53.33 | 55.7 |
| CDY68009 | Canola | cytosol, endoplasmic reticulum, golgi | 54.24 | 55.59 |
| CDX94966 | Canola | golgi, mitochondrion, peroxisome, plastid | 53.94 | 55.28 |
| AT1G66800.1 | Thale cress | peroxisome, plasma membrane, plastid | 53.33 | 55.17 |
| CDX94965 | Canola | golgi | 53.64 | 54.46 |
| Bra020021.1-P | Field mustard | golgi | 53.03 | 54.35 |
| CDY64747 | Canola | extracellular, golgi, mitochondrion, plastid | 53.03 | 54.01 |
| Bra038342.1-P | Field mustard | cytosol, golgi, peroxisome | 53.03 | 53.85 |
| CDY45844 | Canola | cytosol, golgi, peroxisome | 53.03 | 53.85 |
| AT1G09510.1 | Thale cress | cytosol, plastid, vacuole | 52.42 | 53.73 |
| VIT_13s0067g00690.t01 | Wine grape | cytosol | 50.3 | 53.72 |
| CDY72415 | Canola | cytosol, endoplasmic reticulum, peroxisome | 52.73 | 53.54 |
| AT1G09490.1 | Thale cress | golgi | 52.12 | 53.42 |
| Bra020019.1-P | Field mustard | extracellular, golgi | 52.73 | 53.37 |
| CDX94967 | Canola | plasma membrane | 51.82 | 53.11 |
| Bra020020.1-P | Field mustard | extracellular, golgi | 51.52 | 52.8 |
| AT1G09500.1 | Thale cress | endoplasmic reticulum | 51.82 | 52.62 |
| VIT_13s0047g00550.t01 | Wine grape | mitochondrion, vacuole | 53.94 | 51.59 |
| CDX94968 | Canola | endoplasmic reticulum, golgi, plastid | 50.91 | 51.53 |
| CDY64748 | Canola | cytosol | 53.33 | 47.06 |
| AT1G09480.1 | Thale cress | cytosol | 52.42 | 46.88 |
| TraesCS5A01G225100.3 | Wheat | cytosol, plastid | 47.58 | 45.11 |
| TraesCS5A01G473600.1 | Wheat | cytosol | 43.33 | 43.33 |
| TraesCS5A01G061700.1 | Wheat | cytosol | 43.03 | 41.89 |
| TraesCS7A01G149000.1 | Wheat | cytosol | 43.64 | 41.74 |
| TraesCS5A01G271200.1 | Wheat | mitochondrion | 43.64 | 41.38 |
| TraesCS5A01G061600.1 | Wheat | cytosol, mitochondrion, peroxisome | 42.12 | 41.37 |
| TraesCS3A01G348600.1 | Wheat | cytosol | 40.61 | 40.85 |
| TraesCS5A01G163400.1 | Wheat | cytosol | 43.64 | 40.34 |
| TraesCS3A01G046700.1 | Wheat | cytosol | 39.09 | 39.21 |
| TraesCS6A01G381400.1 | Wheat | cytosol | 40.61 | 38.84 |
| TraesCS6A01G380800.1 | Wheat | cytosol | 40.0 | 38.82 |
| TraesCS5A01G410400.1 | Wheat | cytosol | 39.7 | 38.76 |
| TraesCS7A01G250100.1 | Wheat | cytosol, mitochondrion, plastid | 43.64 | 38.3 |
| TraesCS5A01G410100.1 | Wheat | cytosol | 37.88 | 37.31 |
| TraesCS6A01G381700.1 | Wheat | golgi, mitochondrion | 41.21 | 36.07 |
| TraesCS6A01G381100.1 | Wheat | cytosol | 30.3 | 35.84 |
| TraesCS5A01G061800.1 | Wheat | cytosol | 29.39 | 34.77 |
| VIT_13s0047g00990.t01 | Wine grape | endoplasmic reticulum | 63.33 | 34.26 |
| TraesCS6A01G380900.1 | Wheat | cytosol | 38.18 | 32.81 |
| TraesCS6A01G147300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 40.91 | 31.69 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G331900.2 | EnsemblPlantsGene:TraesCS4A01G331900 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003854 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016616 |
| GO:GO:0055114 | InterPro:3Beta_OHSteriod_DH/Estase | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF407 | PFAM:PF01073 |
| SUPFAM:SSF51735 | TIGR:cd08958 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:616310241..616313839
Molecular Weight (calculated)
36284.6 Da
IEP (calculated)
6.843
GRAVY (calculated)
-0.034
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGMGKVVC VTGASGYIAS WLVKLLLHRG YTVRATVRDT ADPKKTLHLQ ALDGAKDRLH LFKASLLEEG SFDAAVAGCD CVFHTASPFY HNVKDPKAEL
101: LDPAVNGTLN VLRSCKKASI KRVIITSSMA AVAYNGKPRT PDVVVDETWF SSAEVCEKNE QWYVLSKTLA EEAAWKFAND NGFEIVTINP AMVIGPLLQP
201: TLNTSAEAIL KFINGSSSTY PNFSFGWVNV KDVALSHILA YEVPSANGRY CMVERVAHHS EIVKIIHEMY PNFPVPDKCA DDAPFVPIYQ VSKDKIRSLG
301: MELIPLETSL KETIESLREK GFVTSESSHL
101: LDPAVNGTLN VLRSCKKASI KRVIITSSMA AVAYNGKPRT PDVVVDETWF SSAEVCEKNE QWYVLSKTLA EEAAWKFAND NGFEIVTINP AMVIGPLLQP
201: TLNTSAEAIL KFINGSSSTY PNFSFGWVNV KDVALSHILA YEVPSANGRY CMVERVAHHS EIVKIIHEMY PNFPVPDKCA DDAPFVPIYQ VSKDKIRSLG
301: MELIPLETSL KETIESLREK GFVTSESSHL
001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
Arabidopsis Description
At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.