Factsheet for TraesCS6A01G147300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

peroxisome 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G136600.2	Wheat	extracellular, vacuole	77.23	95.64
HORVU6Hr1G028980.18	Barley	endoplasmic reticulum, extracellular	73.0	90.14
TraesCS6B01G175600.2	Wheat	plastid	77.0	85.64
EES04640	Sorghum	golgi, plastid	68.78	85.42
Os02t0180700-01	Rice	extracellular	67.84	84.01
Zm00001d015513_P001	Maize	golgi, peroxisome, plastid, vacuole	67.14	82.66
GSMUA_Achr11P...	Banana	plastid	50.94	65.17
Solyc03g116910.2.1	Tomato	endoplasmic reticulum, peroxisome, plastid	46.71	59.94
PGSC0003DMT400051049	Potato	endoplasmic reticulum, peroxisome, plastid	46.71	59.94
KRH47350	Soybean	cytosol	46.24	59.34
KRH44552	Soybean	cytosol	45.77	58.56
Solyc06g068440.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plastid	45.54	58.43
CDY35052	Canola	cytosol	37.79	58.33
KRH09656	Soybean	cytosol	45.77	58.04
PGSC0003DMT400073398	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	45.07	57.83
TraesCS5A01G163400.1	Wheat	cytosol	48.36	57.7
VIT_09s0070g00240.t01	Wine grape	cytosol	45.31	57.1
TraesCS5A01G225100.3	Wheat	cytosol, plastid	46.48	56.9
AT1G80820.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	44.13	56.63
KRH23636	Soybean	cytosol	44.84	56.51
CDY63972	Canola	cytosol	43.9	56.5
CDX81743	Canola	cytosol	44.84	56.18
CDX87345	Canola	cytosol	43.66	56.02
Bra035150.1-P	Field mustard	cytosol	43.66	56.02
CDY64860	Canola	cytosol	43.43	55.89
Bra008438.1-P	Field mustard	cytosol	43.43	55.89
Bra026090.1-P	Field mustard	cytosol	44.6	55.72
CDY52857	Canola	cytosol	44.84	55.69
Bra026737.1-P	Field mustard	cytosol	44.84	55.69
TraesCS7A01G149000.1	Wheat	cytosol	45.07	55.65
CDY39941	Canola	cytosol	43.19	55.42
CDY33365	Canola	cytosol	44.6	55.39
AT1G15950.1	Thale cress	cytosol	44.6	55.23
TraesCS5A01G061600.1	Wheat	cytosol, mitochondrion, peroxisome	41.31	52.38
TraesCS5A01G061700.1	Wheat	cytosol	41.55	52.21
TraesCS6A01G381400.1	Wheat	cytosol	39.91	49.28
TraesCS5A01G410400.1	Wheat	cytosol	38.26	48.22
TraesCS6A01G380800.1	Wheat	cytosol	38.26	47.94
TraesCS5A01G410100.1	Wheat	cytosol	37.32	47.46
TraesCS6A01G381100.1	Wheat	cytosol	29.58	45.16
TraesCS6A01G381700.1	Wheat	golgi, mitochondrion	39.67	44.83
TraesCS4A01G331600.1	Wheat	cytosol, golgi, plastid	22.77	44.5
TraesCS5A01G061800.1	Wheat	cytosol	28.17	43.01
TraesCS6A01G380900.1	Wheat	cytosol	38.03	42.19
TraesCS4A01G331900.2	Wheat	golgi, unclear	31.69	40.91
TraesCS5A01G473600.1	Wheat	cytosol	31.22	40.3
TraesCS3A01G046700.1	Wheat	cytosol	28.87	37.39
TraesCS3A01G348600.1	Wheat	cytosol	28.64	37.2
TraesCS5A01G517000.1	Wheat	mitochondrion	31.22	36.84
TraesCS5A01G271200.1	Wheat	mitochondrion	28.64	35.06
TraesCS7A01G250100.1	Wheat	cytosol, mitochondrion, plastid	29.58	33.51

Protein Annotations

EnsemblPlants:TraesCS6A01G147300.1	EnsemblPlantsGene:TraesCS6A01G147300	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF432	PFAM:PF01370
SEG:seg	SUPFAM:SSF51735	TIGR:cd08958	TMHMM:TMhelix	MapMan:21.6.1.5	:

Description

No Description!

Coordinates

chr6A:-:127189712..127192484

Molecular Weight (calculated)

46687.3 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.259

Length

426 amino acids

Sequence
(BLAST)

001: MIDLTKAKLG GGKEHVPSHE VSPGRFLYYY FPHRAWSALH TLLGKRFTRP RWSQSPSRSP RPGPRVAVLT GPPGRGCFHG VAMAAVVCVT GAGGFIGSWI
101: VKMLLARGYA VRGTSRRADD PKNAHLWALD GAAERLTMVQ VDLLDRASLR AAFDGCDGVI HTASPMHDTP EEIIEPVITG TLNVVEMAAD AGVRRVVLSS
201: SIGTMYMNPH RDPDAPLDES CWSDLDYCKQ TKNWYCYAKT IAERGAWEAA RALGLDLAVV IPVVTLGELL QPTMNTSTRH ILKYLTGEAK AYVNESQAYV
301: HVKDAAEAHV RVLEAPNAGG RRYVCAERTL HRGELCRILA GLFPDHPIPT RCKDEVNPPK KGYKYTNQPL KDLGMKFTPV QEYLCEAVKS LQEKGFIQKA
401: SGTKVPASRG GSRPQNSAAP VFMSKL

Best Arabidopsis Sequence Match ( AT1G15950.1 )
(BLAST)

001: MPVDVASPAG KTVCVTGAGG YIASWIVKIL LERGYTVKGT VRNPDDPKNT HLRELEGGKE RLILCKADLQ DYEALKAAID GCDGVFHTAS PVTDDPEQMV
101: EPAVNGAKFV INAAAEAKVK RVVITSSIGA VYMDPNRDPE AVVDESCWSD LDFCKNTKNW YCYGKMVAEQ AAWETAKEKG VDLVVLNPVL VLGPPLQPTI
201: NASLYHVLKY LTGSAKTYAN LTQAYVDVRD VALAHVLVYE APSASGRYLL AESARHRGEV VEILAKLFPE YPLPTKCKDE KNPRAKPYKF TNQKIKDLGL
301: EFTSTKQSLY DTVKSLQEKG HLAPPPPPPS ASQESVENGI KIGS

Arabidopsis Description

CCR1Cinnamoyl-CoA reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.