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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:
  • cytosol 2
  • plastid 2
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400073398 Potato cytosol, endoplasmic reticulum, mitochondrion, plastid 99.1 99.1
Solyc03g116910.2.1 Tomato endoplasmic reticulum, peroxisome, plastid 87.95 87.95
VIT_09s0070g00240.t01 Wine grape cytosol 82.83 81.36
CDY35052 Canola cytosol 65.06 78.26
KRH44552 Soybean cytosol 76.81 76.58
KRH47350 Soybean cytosol 76.51 76.51
KRH09656 Soybean cytosol 77.41 76.49
CDX81743 Canola cytosol 77.71 75.88
Bra026090.1-P Field mustard cytosol 76.81 74.78
CDY52857 Canola cytosol 77.11 74.64
KRH23636 Soybean cytosol 75.9 74.56
Bra026737.1-P Field mustard cytosol 76.81 74.34
CDY33365 Canola cytosol 76.81 74.34
AT1G15950.1 Thale cress cytosol 76.51 73.84
CDY64860 Canola cytosol 73.19 73.41
CDY63972 Canola cytosol 73.19 73.41
Bra008438.1-P Field mustard cytosol 73.19 73.41
CDX87345 Canola cytosol 73.19 73.19
Bra035150.1-P Field mustard cytosol 73.19 73.19
CDY39941 Canola cytosol 72.59 72.59
AT1G80820.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 72.59 72.59
GSMUA_Achr5P04460_001 Banana cytosol, peroxisome, plastid 70.78 69.94
GSMUA_Achr11P... Banana plastid 68.37 68.17
TraesCS7D01G150500.1 Wheat cytosol 69.88 68.04
HORVU7Hr1G030380.2 Barley cytosol 69.58 67.74
TraesCS5A01G225100.3 Wheat cytosol, plastid 70.78 67.53
GSMUA_Achr11P... Banana cytosol 68.07 67.46
Zm00001d019669_P001 Maize cytosol 69.28 67.45
OQU89100 Sorghum cytosol 69.88 67.05
TraesCS7A01G149000.1 Wheat cytosol 69.58 66.96
TraesCS7D01G150600.1 Wheat cytosol 68.67 66.47
TraesCS5D01G232400.1 Wheat cytosol, peroxisome, plastid 70.18 66.38
TraesCS5B01G223700.2 Wheat cytosol 70.78 65.83
Os08t0441500-01 Rice cytosol, peroxisome, plastid 71.39 65.65
HORVU7Hr1G022220.4 Barley cytosol 67.17 65.59
EER89338 Sorghum cytosol 68.07 65.32
Os09t0419200-01 Rice cytosol 70.18 65.27
Os09t0127300-01 Rice cytosol 67.47 64.55
EES15061 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 72.29 64.17
TraesCS5D01G073300.1 Wheat cytosol 64.46 63.69
HORVU0Hr1G013070.1 Barley cytosol 65.36 63.27
Zm00001d045101_P001 Maize cytosol 64.76 63.24
TraesCS5B01G069600.1 Wheat cytosol, mitochondrion, peroxisome 63.86 63.1
TraesCS5A01G061600.1 Wheat cytosol, mitochondrion, peroxisome 63.55 62.8
HORVU5Hr1G065330.5 Barley cytosol, peroxisome, plastid 71.08 62.43
HORVU5Hr1G050940.1 Barley cytosol 66.87 62.01
TraesCS7B01G052700.1 Wheat plastid 68.67 61.79
TraesCS5D01G073400.1 Wheat cytosol 62.95 61.65
TraesCS5B01G069500.1 Wheat cytosol 62.95 61.65
TraesCS5D01G168400.1 Wheat cytosol 66.27 61.62
TraesCS5A01G163400.1 Wheat cytosol 65.96 61.34
TraesCS5A01G061700.1 Wheat cytosol 62.35 61.06
TraesCS5B01G160700.1 Wheat cytosol 66.57 60.55
Os08t0277200-01 Rice plastid 62.35 60.53
Zm00001d050417_P001 Maize cytosol 65.96 60.33
TraesCS7B01G052600.1 Wheat cytosol 69.58 58.78
Zm00001d032152_P001 Maize cytosol 70.48 57.35
TraesCS6D01G136600.2 Wheat extracellular, vacuole 58.73 56.69
EES04640 Sorghum golgi, plastid 58.43 56.56
Os02t0180700-01 Rice extracellular 57.83 55.81
HORVU5Hr1G016690.3 Barley cytosol 60.54 55.68
HORVU6Hr1G028980.18 Barley endoplasmic reticulum, extracellular 57.83 55.65
HORVU5Hr1G016620.2 Barley cytosol 60.24 55.56
Zm00001d015513_P001 Maize golgi, peroxisome, plastid, vacuole 57.53 55.2
TraesCS5A01G061800.1 Wheat cytosol 43.37 51.61
Solyc01g008550.2.1 Tomato extracellular, nucleus 49.7 51.56
TraesCS6B01G175600.2 Wheat plastid 58.43 50.65
Solyc01g008540.2.1 Tomato endoplasmic reticulum 48.8 50.15
Solyc01g008530.2.1 Tomato endoplasmic reticulum 47.89 48.48
Solyc01g087640.2.1 Tomato cytosol 45.18 45.73
TraesCS6A01G147300.1 Wheat cytosol, endoplasmic reticulum, peroxisome 58.43 45.54
Solyc11g072510.1.1 Tomato cytosol, extracellular 43.37 44.44
Solyc01g102730.2.1 Tomato cytosol, peroxisome, plastid 43.07 43.87
Solyc01g068080.2.1 Tomato cytosol, extracellular, plastid 39.76 41.25
Solyc04g008780.2.1 Tomato cytosol 41.87 41.12
HORVU5Hr1G016670.3 Barley plastid 1.2 9.52
Protein Annotations
EMBL:DQ019125EnsemblPlants:Solyc06g068440.2.1EnsemblPlantsGene:Solyc06g068440.2Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016621GO:GO:0050662
GO:GO:0055114InterPro:Epimerase_deHydtaseInterPro:NAD(P)-bd_dom_sfPANTHER:PTHR10366PANTHER:PTHR10366:SF404PFAM:PF01370
SUPFAM:SSF51735UniParc:UPI000051972FUniProt:Q4U1I5MapMan:21.6.1.5::
Description
Cinnamoyl-CoA reductase [Source:UniProtKB/TrEMBL;Acc:Q4U1I5]
Coordinates
chr6:+:42404003..42406617
Molecular Weight (calculated)
36791.3 Da
IEP (calculated)
7.102
GRAVY (calculated)
-0.180
Length
332 amino acids
Sequence
(BLAST)
001: MPSVSGRVVC VTGAGGFIAS WLVKLLLEKG YTVRGTVRNP DDPKNCHLRE LEGAKERLTL CRGDLLDYQS LREAINGCDG VFHTASPVTD DPEQMVEPAV
101: IGTKNVITAA AEANVRRVVF TSSIGAVYMD PSRDPEKVVD ETCWSDPDFC KNTKNWYCYG KMVAEQAAWD EAREKGVDLV AINPVLVLGP LLQNTVNASV
201: LHILKYLTGS AKTYANSVQA YVHVKDVALA HILLYETPSA SGRYLCAESV LHRGDIVEIL AKFFPEYPIP TKCSDVTKPR VKPYKFSNQK LKDLGMEFTP
301: VKQCLYETVK SLQEKGHLPI PTQKDEIIRI QT
Best Arabidopsis Sequence Match ( AT1G15950.1 )
(BLAST)
001: MPVDVASPAG KTVCVTGAGG YIASWIVKIL LERGYTVKGT VRNPDDPKNT HLRELEGGKE RLILCKADLQ DYEALKAAID GCDGVFHTAS PVTDDPEQMV
101: EPAVNGAKFV INAAAEAKVK RVVITSSIGA VYMDPNRDPE AVVDESCWSD LDFCKNTKNW YCYGKMVAEQ AAWETAKEKG VDLVVLNPVL VLGPPLQPTI
201: NASLYHVLKY LTGSAKTYAN LTQAYVDVRD VALAHVLVYE APSASGRYLL AESARHRGEV VEILAKLFPE YPLPTKCKDE KNPRAKPYKF TNQKIKDLGL
301: EFTSTKQSLY DTVKSLQEKG HLAPPPPPPS ASQESVENGI KIGS
Arabidopsis Description
CCR1Cinnamoyl-CoA reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.