Factsheet for Solyc01g008540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008550.2.1	Tomato	extracellular, nucleus	80.5	81.25
Solyc01g008530.2.1	Tomato	endoplasmic reticulum	72.76	71.65
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	70.59	70.81
VIT_06s0004g02370.t01	Wine grape	endoplasmic reticulum, golgi	67.8	68.01
AT1G51410.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	68.42	68.0
Bra014263.1-P	Field mustard	cytosol	67.8	67.38
KRG98697	Soybean	nucleus	67.8	67.38
CDY65726	Canola	cytosol	67.8	67.38
CDY03618	Canola	cytosol	67.8	67.38
CDY43911	Canola	cytosol	67.49	67.08
Bra023231.1-P	Field mustard	cytosol	67.18	66.77
Bra030440.1-P	Field mustard	cytosol	67.18	66.77
CDY22576	Canola	cytosol	66.87	66.46
KRG98694	Soybean	endoplasmic reticulum	66.56	66.15
KRH24064	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.23	61.28
KRH24068	Soybean	endoplasmic reticulum	61.3	60.92
KRH24066	Soybean	mitochondrion	63.16	60.18
Solyc01g087640.2.1	Tomato	cytosol	58.2	57.32
Solyc06g068440.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plastid	50.15	48.8
Solyc03g116910.2.1	Tomato	endoplasmic reticulum, peroxisome, plastid	49.85	48.49
Solyc11g072510.1.1	Tomato	cytosol, extracellular	45.51	45.37
Solyc01g102730.2.1	Tomato	cytosol, peroxisome, plastid	43.96	43.56
Solyc04g008780.2.1	Tomato	cytosol	44.58	42.6
Solyc01g068080.2.1	Tomato	cytosol, extracellular, plastid	40.87	41.25

Protein Annotations

EnsemblPlants:Solyc01g008540.2.1	EnsemblPlantsGene:Solyc01g008540.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF407	PFAM:PF01370
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002763124	UniProt:K4AT52	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:-:2638864..2644380

Molecular Weight (calculated)

35887.2 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.111

Length

323 amino acids

Sequence
(BLAST)

001: MSLETKTVVC VTGASGFIAS WLVKLLLNRG YTVKASVRDP NDQEKIDHLT CLDGAKERLH LFKASLLEQG SFDAVVDGCE GVFHTASPCY FEAKDPQAEL
101: IDPAVKGTLN VLGSVAKTTT VRRVVLTSSI AAVSFNGKPR TREAVIDETW WSDPDYCRKK QLWYILSKTL AEDAAWKFAK EKGFDMVTIN PATVIGSLLQ
201: PTLNTTCDAI LQLLKGSETY PNTTSGWVNV KDVALAHILA FENPSANGRY IMVESVAHYS ELVQILRELY PTMKLPERCV VDKPFPPKYQ VNIEKTRTLG
301: VEFTPLALSI KETAESLKEK KFY

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.