CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24068	Soybean	endoplasmic reticulum	72.87	73.54
KRG98697	Soybean	nucleus	71.95	72.62
KRG98694	Soybean	endoplasmic reticulum	70.73	71.38
KRH24066	Soybean	mitochondrion	72.26	69.91
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	68.6	69.88
Solyc01g008550.2.1	Tomato	extracellular, nucleus	65.55	67.19
VIT_06s0004g02370.t01	Wine grape	endoplasmic reticulum, golgi	64.33	65.53
AT1G51410.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	64.63	65.23
Solyc01g008530.2.1	Tomato	endoplasmic reticulum	64.94	64.94
Bra014263.1-P	Field mustard	cytosol	64.02	64.62
CDY03618	Canola	cytosol	64.02	64.62
CDY65726	Canola	cytosol	64.02	64.62
CDY43911	Canola	cytosol	64.02	64.62
Bra030440.1-P	Field mustard	cytosol	63.72	64.31
Bra023231.1-P	Field mustard	cytosol	63.41	64.0
CDY22576	Canola	cytosol	63.41	64.0
Solyc01g008540.2.1	Tomato	endoplasmic reticulum	61.28	62.23
KRH47350	Soybean	cytosol	46.04	45.48
KRH09656	Soybean	cytosol	46.34	45.24
KRH44552	Soybean	cytosol	45.43	44.74
KRH23636	Soybean	cytosol	45.43	44.08
KRH72740	Soybean	cytosol	42.99	44.06
KRH75363	Soybean	cytosol	40.55	41.69
KRG98212	Soybean	endoplasmic reticulum	40.55	41.43
KRH49476	Soybean	cytosol	40.24	41.38
KRH30171	Soybean	nucleus	39.94	40.81
KRH23414	Soybean	mitochondrion	41.16	40.79
KRH09917	Soybean	mitochondrion	41.16	40.66
KRH17091	Soybean	cytosol, golgi, plastid	42.07	38.33
KRH11704	Soybean	cytosol	38.41	38.18

Protein Annotations

EMBL:ACUP02007168	EMBL:BT094696	EnsemblPlants:KRH24064	EnsemblPlantsGene:GLYMA_12G019700	EntrezGene:100799213	Gene3D:3.40.50.720
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR10366	PANTHER:PTHR10366:SF407	PFAM:PF01370	ProteinID:KRH24064	ProteinID:KRH24064.1	ProteinID:KRH24065.1
SUPFAM:SSF51735	UniParc:UPI000189D937	UniProt:C6TB02	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr12:-:1380962..1385806

Molecular Weight (calculated)

36545.9 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.084

Length

328 amino acids

Sequence
(BLAST)

001: MSNNNAGKVV CVTGASGFIA SWIVKFLLQR GYTVRATVRY PSNLKKVDHL VKLEGAKERL QLFKADLLEE GSFDSVVEGC HGVFHTASPV RFVVNDPQAE
101: LLDPAVKGTL NVLKSCAKSP SVKRVVLTSS ISAVAFNRRP KTPQVVVDET WFSDPDVCRE LELWYTLSKT LAEDAAWKFV NENSIDMISI NPTMVAGPLL
201: QPEINESVEP ILNLINGKPF PNKSFGWVDV KDVANAHILA YEIASASGRY CLVERVIHYS ELATILRGLY PTLQIPDKCE VDEPYIPTYQ ISTEKAKKDL
301: GIEFTPLEVS LRETVESFRE KKIVNFNP

Best Arabidopsis Sequence Match ( AT1G09510.1 )
(BLAST)

001: MADGGKMVCV TGASGYVASW IVKLLLLRGY TVRATVRDPS DEKKTEHLLA LDGAKEKLKL FKADLLEEGS FEQAIEGCDA VFHTASPVSL TVTDPQIELI
101: DPAVKGTLNV LKTCAKVSSV KRVIVTSSMA AVLFREPTLG PNDLVDESCF SDPNFCTEKK LWYALSKTLA EDEAWRFAKE KGLDLVVINP GLVLGPLLKP
201: SLTFSVNVIV ELITGKDNFI NKDFRLVDVR DVALAHIKAF ETPSANGRYI IEGPVVTIND IEKILREFFP DLNLGNKGEA SEIIPVIYKL CVEKVKSLGI
301: EFTPTEATLR DTILSLKEKC LV

Arabidopsis Description

At1g09510 [Source:UniProtKB/TrEMBL;Acc:Q5PP57]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.