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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus

Predictor Summary:
  • cytosol 2
  • plastid 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:golgi, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g008540.2.1 Tomato endoplasmic reticulum 81.25 80.5
Solyc01g008530.2.1 Tomato endoplasmic reticulum 78.12 76.22
VIT_06s0004g02380.t01 Wine grape endoplasmic reticulum, golgi, plastid 76.56 76.09
KRG98697 Soybean nucleus 75.94 74.77
VIT_06s0004g02370.t01 Wine grape endoplasmic reticulum, golgi 74.06 73.6
KRG98694 Soybean endoplasmic reticulum 74.38 73.23
AT1G51410.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 70.31 69.23
Bra014263.1-P Field mustard cytosol 69.69 68.62
CDY65726 Canola cytosol 69.69 68.62
CDY03618 Canola cytosol 69.69 68.62
CDY43911 Canola cytosol 69.38 68.31
Bra030440.1-P Field mustard cytosol 69.06 68.0
Bra023231.1-P Field mustard cytosol 69.06 68.0
CDY22576 Canola cytosol 68.44 67.38
KRH24066 Soybean mitochondrion 70.0 66.08
KRH24068 Soybean endoplasmic reticulum 66.88 65.85
KRH24064 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 67.19 65.55
Solyc01g087640.2.1 Tomato cytosol 60.31 58.84
Solyc06g068440.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion, plastid 51.56 49.7
Solyc03g116910.2.1 Tomato endoplasmic reticulum, peroxisome, plastid 49.69 47.89
Solyc11g072510.1.1 Tomato cytosol, extracellular 45.31 44.75
Solyc04g008780.2.1 Tomato cytosol 46.56 44.08
Solyc01g102730.2.1 Tomato cytosol, peroxisome, plastid 41.56 40.8
Solyc01g068080.2.1 Tomato cytosol, extracellular, plastid 40.31 40.31
Protein Annotations
EMBL:EF613491EnsemblPlants:Solyc01g008550.2.1EnsemblPlantsGene:Solyc01g008550.2Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0050662InterPro:Epimerase_deHydtaseInterPro:NAD(P)-bd_dom_sfPANTHER:PTHR10366PANTHER:PTHR10366:SF407
PFAM:PF01370SUPFAM:SSF51735UniParc:UPI000157AD5BUniProt:A6N6K8MapMan:35.1:
Description
Phenylacetaldehyde reductase [Source:UniProtKB/TrEMBL;Acc:A6N6K8]
Coordinates
chr1:-:2646612..2650332
Molecular Weight (calculated)
35470.7 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.039
Length
320 amino acids
Sequence
(BLAST)
001: MAMRTVCVTG ASGYIASWLV KFLLQRGYTV KATVRDLNDQ KKVDHLTSLD GAKERLHLFK ADLLEEGSFD AVVEGCEGVF HTASPFYLGV KDPQVEMIDP
101: ALKGTLNVLG SVAKTPSVRR VVLTSSVAAV AFNGKPRTPE VVVDETWWSD PDFCRESQLW YVLSKTLAED AAWKFVKEKA FDMVTINPAM VIGGLLQPTL
201: NTSAAAILQL LNGSETYPNS TFGWVNVKDV ALAHILAFEN PSANGRYLMV ESVAHYSEIV KILRELYPTL KLPEKCADDK PFTPTYQVNV ERAKKLGIEF
301: IPLAESVKET AESLKEKKFY
Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)
001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
Arabidopsis Description
At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.