Factsheet for VIT_06s0004g02370.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	84.47	84.47
Solyc01g008550.2.1	Tomato	extracellular, nucleus	73.6	74.06
KRG98697	Soybean	nucleus	74.53	73.85
Solyc01g008530.2.1	Tomato	endoplasmic reticulum	75.16	73.78
Bra014263.1-P	Field mustard	cytosol	73.91	73.23
CDY03618	Canola	cytosol	73.91	73.23
CDY65726	Canola	cytosol	73.91	73.23
KRG98694	Soybean	endoplasmic reticulum	73.91	73.23
AT1G51410.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	73.6	72.92
Bra023231.1-P	Field mustard	cytosol	73.29	72.62
CDY43911	Canola	cytosol	73.29	72.62
Bra030440.1-P	Field mustard	cytosol	72.98	72.31
CDY22576	Canola	cytosol	72.67	72.0
VIT_03s0110g00350.t01	Wine grape	cytosol	72.36	71.91
VIT_13s0064g00270.t01	Wine grape	cytosol, endoplasmic reticulum	72.05	71.17
VIT_13s0064g00290.t01	Wine grape	cytosol, extracellular, plastid	46.58	69.44
VIT_13s0047g00940.t01	Wine grape	cytosol	69.57	69.35
VIT_13s0047g00540.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	69.57	69.35
KRH24068	Soybean	endoplasmic reticulum	69.25	68.62
VIT_13s0101g00240.t01	Wine grape	cytosol	54.35	67.83
Solyc01g008540.2.1	Tomato	endoplasmic reticulum	68.01	67.8
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	68.63	67.58
VIT_13s0067g00530.t01	Wine grape	endoplasmic reticulum	68.01	67.18
VIT_13s0067g00460.t01	Wine grape	endoplasmic reticulum	68.01	67.18
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	67.39	66.36
KRH24066	Soybean	mitochondrion	69.25	65.78
VIT_15s0107g00210.t01	Wine grape	extracellular, plastid	70.19	65.51
VIT_13s0101g00250.t01	Wine grape	cytosol	57.14	65.48
KRH24064	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.53	64.33
VIT_13s0067g00680.t01	Wine grape	cytosol	51.86	60.29
VIT_13s0047g00550.t01	Wine grape	mitochondrion, vacuole	62.42	58.26
VIT_13s0067g00690.t01	Wine grape	cytosol	55.9	58.25
VIT_06s0004g07130.t01	Wine grape	cytosol	48.45	47.42
VIT_09s0070g00240.t01	Wine grape	cytosol	49.69	47.34
VIT_03s0038g04220.t01	Wine grape	endoplasmic reticulum	45.34	45.2
VIT_01s0011g03480.t01	Wine grape	cytosol, plastid	40.99	41.25
VIT_12s0035g02070.t01	Wine grape	cytosol	41.3	39.94
VIT_13s0047g00990.t01	Wine grape	endoplasmic reticulum	69.57	36.72
VIT_03s0038g04230.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.26	36.26

Protein Annotations

EntrezGene:100250166	wikigene:100250166	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB43699	ProteinID:CCB43699.1
InterPro:Epimerase_deHydtase	UniProt:F6GU35	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	EntrezGene:LOC100250166	wikigene:LOC100250166	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	PANTHER:PTHR10366
PANTHER:PTHR10366:SF407	SUPFAM:SSF51735	TIGR:TC64537	UniParc:UPI00015C81D8	ArrayExpress:VIT_06s0004g02370	EnsemblPlantsGene:VIT_06s0004g02370
EnsemblPlants:VIT_06s0004g02370.t01	unigene:Vvi.15549	RefSeq:XP_002285374	RefSeq:XP_002285374.2	RefSeq:XP_010651224.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:2810986..2815335

Molecular Weight (calculated)

35592.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.022

Length

322 amino acids

Sequence
(BLAST)

001: MSSGVVCVTG ASGYIASWLV KLLLQRDYTV KASVRDPNDP KKTEHLLSLD GAKERLHLFK ANLLEEGSFD SIVEGCVGVF HTASPFYYGV TDPQAELIDP
101: ALKGTLNVLS SCAKTPTVKR VVVTSSIAAV VYSGKPRTPE IVVDETWFSN QDICKEMKHW YALSKTLAEE AAWKFAKEKG MDIVTINPAM VIGPLLQPTL
201: NASAATILNL INGAQIFPNF TMGWVHVKDV AEAHIQAFEI PSANGRYCLA ERTVHYSEIV KILKDLFPDF QLPVKCADDH PFMPTYQISK EKAKSLGIEF
301: IPLEESLKET VESLKEKKFL SP

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.