Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0017g00210.t01 | |
| VIT_16s0115g00130.t01 | |
| VIT_19s0027g01340.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35420.1 | VIT_03s0017g00210.t01 | AT3G08530.1 | 21798944 |
| AT4G35420.1 | VIT_16s0115g00130.t01 | AT3G08530.1 | 21798944 |
| AT4G35420.1 | VIT_19s0027g01340.t01 | AT3G08530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g04230.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 59.13 | 76.1 |
| CDX75502 | Canola | cytosol, extracellular, plastid | 74.92 | 75.86 |
| CDY41656 | Canola | cytosol, plastid, vacuole | 74.3 | 75.71 |
| AT4G35420.1 | Thale cress | extracellular | 76.16 | 75.46 |
| CDY24810 | Canola | cytosol | 73.99 | 75.39 |
| CDX69139 | Canola | cytosol, extracellular, plastid | 73.99 | 74.92 |
| Bra010535.1-P | Field mustard | cytosol | 71.21 | 74.19 |
| KRH09917 | Soybean | mitochondrion | 73.37 | 71.39 |
| KRH23414 | Soybean | mitochondrion | 73.06 | 71.3 |
| PGSC0003DMT400065107 | Potato | cytosol | 73.68 | 71.04 |
| Solyc04g008780.2.1 | Tomato | cytosol | 73.68 | 70.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.35 | 68.92 |
| EER99113 | Sorghum | mitochondrion | 69.04 | 67.78 |
| Zm00001d020970_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.11 | 66.47 |
| Os08t0515900-01 | Rice | cytosol | 59.75 | 65.42 |
| TraesCS7B01G141100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 65.33 | 64.13 |
| TraesCS7D01G248800.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 65.02 | 63.83 |
| EES14250 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 65.02 | 62.69 |
| TraesCS5A01G271200.1 | Wheat | mitochondrion | 65.63 | 60.92 |
| TraesCS5B01G271500.1 | Wheat | mitochondrion | 65.63 | 60.92 |
| TraesCS5D01G278800.1 | Wheat | mitochondrion | 65.33 | 60.63 |
| Os09t0493500-02 | Rice | plastid | 66.87 | 59.02 |
| TraesCS7A01G250100.1 | Wheat | cytosol, mitochondrion, plastid | 65.63 | 56.38 |
| VIT_13s0064g00290.t01 | Wine grape | cytosol, extracellular, plastid | 34.67 | 51.85 |
| Zm00001d031488_P002 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 51.7 | 48.69 |
| VIT_01s0011g03480.t01 | Wine grape | cytosol, plastid | 47.37 | 47.81 |
| VIT_13s0047g00540.t01 | Wine grape | cytosol, endoplasmic reticulum, plastid | 46.13 | 46.13 |
| VIT_13s0047g00940.t01 | Wine grape | cytosol | 46.13 | 46.13 |
| VIT_13s0064g00270.t01 | Wine grape | cytosol, endoplasmic reticulum | 46.44 | 46.01 |
| VIT_13s0101g00240.t01 | Wine grape | cytosol | 36.22 | 45.35 |
| VIT_06s0004g02370.t01 | Wine grape | endoplasmic reticulum, golgi | 45.2 | 45.34 |
| VIT_13s0101g00250.t01 | Wine grape | cytosol | 39.01 | 44.84 |
| VIT_13s0067g00460.t01 | Wine grape | endoplasmic reticulum | 45.2 | 44.79 |
| VIT_13s0067g00530.t01 | Wine grape | endoplasmic reticulum | 45.2 | 44.79 |
| VIT_03s0110g00350.t01 | Wine grape | cytosol | 44.89 | 44.75 |
| VIT_06s0004g02380.t01 | Wine grape | endoplasmic reticulum, golgi, plastid | 44.58 | 44.72 |
| VIT_13s0067g00590.t01 | Wine grape | endoplasmic reticulum, golgi | 44.89 | 44.34 |
| VIT_09s0070g00240.t01 | Wine grape | cytosol | 44.27 | 42.31 |
| VIT_13s0067g00620.t01 | Wine grape | endoplasmic reticulum, golgi | 42.72 | 42.2 |
| VIT_06s0004g07130.t01 | Wine grape | cytosol | 42.72 | 41.95 |
| VIT_15s0107g00210.t01 | Wine grape | extracellular, plastid | 43.96 | 41.16 |
| VIT_13s0067g00680.t01 | Wine grape | cytosol | 35.29 | 41.16 |
| VIT_13s0067g00690.t01 | Wine grape | cytosol | 36.84 | 38.51 |
| VIT_13s0047g00550.t01 | Wine grape | mitochondrion, vacuole | 39.63 | 37.1 |
| VIT_12s0035g02070.t01 | Wine grape | cytosol | 38.08 | 36.94 |
| VIT_13s0047g00990.t01 | Wine grape | endoplasmic reticulum | 46.13 | 24.43 |
Protein Annotations
| EntrezGene:100246964 | wikigene:100246964 | MapMan:21.8.1.5 | Gene3D:3.40.50.720 | ProteinID:CBI37707 | ProteinID:CBI37707.3 |
| UniProt:D7U4N8 | InterPro:Epimerase_deHydtase | EMBL:FN596508 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0050662 | GO:GO:0080110 | EntrezGene:LOC100246964 | wikigene:LOC100246964 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF01370 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF493 | SUPFAM:SSF51735 | InterPro:TKPR1 |
| UniParc:UPI0001BE4F91 | ArrayExpress:VIT_03s0038g04220 | EnsemblPlantsGene:VIT_03s0038g04220 | EnsemblPlants:VIT_03s0038g04220.t01 | unigene:Vvi.21558 | RefSeq:XP_002283345 |
| RefSeq:XP_002283345.2 | RefSeq:XP_003631531 | RefSeq:XP_003631531.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:3050295..3052628
Molecular Weight (calculated)
35663.0 Da
IEP (calculated)
6.775
GRAVY (calculated)
-0.033
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQKMVVCVT GASGFLASWL VKRLLLSGYH VTGTVRDPGN DKKLAHLWRL EGARERLTLV RADLMEEGSF DKAIMGCHGV FHTASPVMGS AADPKAEILV
101: PAVEGTLNVL RSCKKNPSLR RVVLTSSSSA ARVRDDFDPK IPLDESSWSS VELCESLQIW YALSKVLAEK AAWEFCKENG IDLVTVLPSF VIGPSLPPDL
201: CSTASDVLGL LKGETEKFKW NGRMGYVHID DVALCHILVY EHENAHGRYL CNSAVVDNNV LASLLSARYP SLPVPKRFDA LDRPYYEFNT SKLQSLGFKF
301: KSIQEMFDDC VASLVEKGHL GQV
101: PAVEGTLNVL RSCKKNPSLR RVVLTSSSSA ARVRDDFDPK IPLDESSWSS VELCESLQIW YALSKVLAEK AAWEFCKENG IDLVTVLPSF VIGPSLPPDL
201: CSTASDVLGL LKGETEKFKW NGRMGYVHID DVALCHILVY EHENAHGRYL CNSAVVDNNV LASLLSARYP SLPVPKRFDA LDRPYYEFNT SKLQSLGFKF
301: KSIQEMFDDC VASLVEKGHL GQV
001: MDQAKGKVCV TGASGFLASW LVKRLLLEGY EVIGTVRDPG NEKKLAHLWK LEGAKERLRL VKADLMEEGS FDNAIMGCQG VFHTASPVLK PTSNPEEEIL
101: RPAIEGTLNV LRSCRKNPSL KRVVLTSSSS TVRIRDDFDP KIPLDESIWT SVELCKRFQV WYALSKTLAE QAAWKFSEEN GIDLVTVLPS FLVGPSLPPD
201: LCSTASDVLG LLKGETEKFQ WHGQMGYVHI DDVARTHIVV FEHEAAQGRY ICSSNVISLE ELVSFLSARY PSLPIPKRFE KLNRLHYDFD TSKIQSLGLK
301: FKSLEEMFDD CIASLVEQGY LSTVLP
101: RPAIEGTLNV LRSCRKNPSL KRVVLTSSSS TVRIRDDFDP KIPLDESIWT SVELCKRFQV WYALSKTLAE QAAWKFSEEN GIDLVTVLPS FLVGPSLPPD
201: LCSTASDVLG LLKGETEKFQ WHGQMGYVHI DDVARTHIVV FEHEAAQGRY ICSSNVISLE ELVSFLSARY PSLPIPKRFE KLNRLHYDFD TSKIQSLGLK
301: FKSLEEMFDD CIASLVEQGY LSTVLP
Arabidopsis Description
TKPR1Tetraketide alpha-pyrone reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q500U8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.