Factsheet for VIT_06s0004g07130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072510.1.1	Tomato	cytosol, extracellular	78.42	79.63
KRH72740	Soybean	cytosol	77.2	79.38
PGSC0003DMT400065273	Potato	cytosol	77.81	79.01
Bra002645.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	77.51	78.95
CDY32979	Canola	cytosol, endoplasmic reticulum, peroxisome	77.51	78.95
CDY57397	Canola	cytosol, endoplasmic reticulum, peroxisome	75.99	77.4
GSMUA_Achr4P18740_001	Banana	cytosol, extracellular, plastid	73.86	76.18
AT5G58490.1	Thale cress	cytosol	74.77	75.93
KRH17091	Soybean	cytosol, golgi, plastid	76.29	69.72
Os03t0818200-01	Rice	cytosol	67.17	66.17
TraesCS5D01G486300.2	Wheat	cytosol	65.65	65.45
TraesCS5B01G486500.1	Wheat	cytosol	65.05	64.85
TraesCS5A01G473600.1	Wheat	cytosol	64.44	64.24
KXG37270	Sorghum	cytosol	63.22	63.41
EER93204	Sorghum	cytosol	62.01	61.82
Zm00001d012980_P001	Maize	cytosol	61.7	61.33
HORVU5Hr1G112340.7	Barley	cytosol, plastid	64.74	56.8
Zm00001d012982_P001	Maize	cytosol	62.61	55.23
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	47.72	48.76
VIT_06s0004g02370.t01	Wine grape	endoplasmic reticulum, golgi	47.42	48.45
VIT_12s0035g02070.t01	Wine grape	cytosol	48.63	48.05
VIT_13s0064g00290.t01	Wine grape	cytosol, extracellular, plastid	30.7	46.76
VIT_09s0070g00240.t01	Wine grape	cytosol	47.72	46.45
VIT_13s0067g00460.t01	Wine grape	endoplasmic reticulum	45.9	46.32
VIT_13s0047g00540.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	45.29	46.13
VIT_13s0047g00940.t01	Wine grape	cytosol	45.29	46.13
VIT_13s0067g00530.t01	Wine grape	endoplasmic reticulum	45.59	46.01
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	45.29	45.57
VIT_13s0101g00240.t01	Wine grape	cytosol	34.95	44.57
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	44.07	44.34
VIT_13s0064g00270.t01	Wine grape	cytosol, endoplasmic reticulum	43.77	44.17
VIT_03s0110g00350.t01	Wine grape	cytosol	43.16	43.83
VIT_03s0038g04220.t01	Wine grape	endoplasmic reticulum	41.95	42.72
VIT_13s0101g00250.t01	Wine grape	cytosol	35.26	41.28
VIT_15s0107g00210.t01	Wine grape	extracellular, plastid	43.16	41.16
VIT_13s0067g00680.t01	Wine grape	cytosol	33.43	39.71
Zm00001d012981_P002	Maize	cytosol	51.37	38.15
VIT_01s0011g03480.t01	Wine grape	cytosol, plastid	36.17	37.19
VIT_13s0047g00550.t01	Wine grape	mitochondrion, vacuole	38.6	36.81
VIT_13s0067g00690.t01	Wine grape	cytosol	34.35	36.57
VIT_03s0038g04230.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.53	33.47
VIT_13s0047g00990.t01	Wine grape	endoplasmic reticulum	45.29	24.43

Protein Annotations

EntrezGene:100253488	wikigene:100253488	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI15902	ProteinID:CBI15902.3
UniProt:D7SJS6	InterPro:Epimerase_deHydtase	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	EntrezGene:LOC100253488	wikigene:LOC100253488	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	PANTHER:PTHR10366
PANTHER:PTHR10366:SF369	SUPFAM:SSF51735	TIGR:TC56404	UniParc:UPI00015C76DB	ArrayExpress:VIT_06s0004g07130	EnsemblPlantsGene:VIT_06s0004g07130
EnsemblPlants:VIT_06s0004g07130.t01	unigene:Vvi.409	RefSeq:XP_002275195	RefSeq:XP_002275195.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:7898099..7902334

Molecular Weight (calculated)

35880.4 Da

IEP (calculated)

6.173

GRAVY (calculated)

0.026

Length

329 amino acids

Sequence
(BLAST)

001: MSSESGSVTR SEVVCVTGGS GYIGSWLVCL LLRRGYTVHA TVKNLKDERE TKHLEALEGA DSRLRLFQID VLDYDSIVAA VNGAAGVFHL ASPCIVDQVQ
101: DPEKELLDPA IKGTNNVLTA AKELGVGRVV VTSSISAIIP SPNWPADVVK GEDCWTDTEY CKQKGIWYPL SKTLAEKAAW EFAKEKGLDV VVVNPGTVMG
201: PILPPGLNAS MLMILRLLQG CTDIYEDFFM GSVHVKDVAL AHILVYENKS ASGRHLCVEA ISHYGDFAAK VAELYPEYKV PRLPKDTQPG LLRAKTASKK
301: LMDLGLQFIP MEQIIKDSVE SLRSKGFIS

Best Arabidopsis Sequence Match ( AT5G58490.1 )
(BLAST)

001: MLTDEREVVC VTGASGCIGS WLVHQLLLRG YSVHATVKNL QDEKETKHLE GLEGAATRLH LFEMDLLQYD TVSAAINGCS GVFHLASPCI VDEVQDPQKQ
101: LLDPAVKGTI NVLTAAKEAS VKRVVVTSSI SAITPSPNWP ADKIKNEECW AAEDYCRQNG LWYPLSKTLA EKAAWEFAEE KGLDVVVVNP GTVMGPVIPP
201: SLNASMHMLL RLLQGCTETY ENFFMGSVHF KDVALAHILV YEDPYSKGRH LCVEAISHYG DFVAKVAELY PNYNVPKLPR ETQPGLLRDK NASKKLIDLG
301: LKFISMEEII KEGVESLKSK GFIS

Arabidopsis Description

Cinnamoyl-CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FGH3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.