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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, peroxisome
Any Predictor:cytosol, endoplasmic reticulum, peroxisome
BaCelLo:cytosol
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002645.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 97.21 97.21
CDY32979 Canola cytosol, endoplasmic reticulum, peroxisome 97.21 97.21
AT5G58490.1 Thale cress cytosol 89.47 89.2
KRH72740 Soybean cytosol 77.71 78.44
VIT_06s0004g07130.t01 Wine grape cytosol 77.4 75.99
GSMUA_Achr4P18740_001 Banana cytosol, extracellular, plastid 72.45 73.35
Solyc11g072510.1.1 Tomato cytosol, extracellular 72.76 72.53
PGSC0003DMT400065273 Potato cytosol 72.76 72.53
KRH17091 Soybean cytosol, golgi, plastid 76.78 68.89
Os03t0818200-01 Rice cytosol 69.04 66.77
TraesCS5D01G486300.2 Wheat cytosol 65.94 64.55
TraesCS5B01G486500.1 Wheat cytosol 65.33 63.94
KXG37270 Sorghum cytosol 64.71 63.72
TraesCS5A01G473600.1 Wheat cytosol 64.71 63.33
Zm00001d012980_P001 Maize cytosol 63.47 61.93
EER93204 Sorghum cytosol 61.92 60.61
HORVU5Hr1G112340.7 Barley cytosol, plastid 65.33 56.27
Zm00001d012982_P001 Maize cytosol 62.85 54.42
CDY09372 Canola cytosol 48.3 48.6
CDY14000 Canola cytosol 48.3 47.85
CDY35052 Canola cytosol 40.87 47.83
CDY15830 Canola cytosol 47.37 47.66
CDX92530 Canola cytosol 47.99 46.97
CDY22576 Canola cytosol 47.06 46.77
CDY03618 Canola cytosol 47.06 46.77
CDY65726 Canola cytosol 47.06 46.77
CDY43911 Canola cytosol 46.44 46.15
CDY52857 Canola cytosol 46.75 44.02
CDX81743 Canola cytosol 46.13 43.82
CDY33365 Canola cytosol 46.13 43.44
CDX87345 Canola cytosol 43.34 42.17
CDY39941 Canola cytosol 43.34 42.17
CDY63972 Canola cytosol 43.03 41.99
CDX94967 Canola plasma membrane 41.8 41.93
CDY68009 Canola cytosol, endoplasmic reticulum, golgi 41.8 41.93
CDY64860 Canola cytosol 42.72 41.69
CDY64747 Canola extracellular, golgi, mitochondrion, plastid 41.18 41.05
CDX94965 Canola golgi 41.18 40.92
CDX94966 Canola golgi, mitochondrion, peroxisome, plastid 39.94 40.06
CDY72415 Canola cytosol, endoplasmic reticulum, peroxisome 40.25 40.0
CDY24810 Canola cytosol 39.01 39.75
CDY41656 Canola cytosol, plastid, vacuole 39.01 39.75
CDY45844 Canola cytosol, golgi, peroxisome 39.94 39.69
CDX75502 Canola cytosol, extracellular, plastid 39.01 39.5
CDX94968 Canola endoplasmic reticulum, golgi, plastid 39.63 39.26
CDX69139 Canola cytosol, extracellular, plastid 38.7 39.19
Zm00001d012981_P002 Maize cytosol 52.01 37.92
CDX96012 Canola cytosol, nucleus, peroxisome 37.46 37.69
CDY38590 Canola cytosol 37.46 37.69
CDX69634 Canola cytosol 37.46 37.69
CDY64748 Canola cytosol 40.25 34.76
CDY42105 Canola cytosol, plastid 33.44 33.64
CDX84989 Canola cytosol 32.82 33.02
CDX84988 Canola cytosol 30.65 32.46
CDY42108 Canola cytosol 21.36 29.36
Protein Annotations
EnsemblPlants:CDY57397EnsemblPlantsGene:GSBRNA2T00020939001Gene3D:3.40.50.720GO:A0A078J265GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0050662InterPro:Epimerase_deHydtaseInterPro:NAD(P)-bd_dom_sfPANTHER:PTHR10366PANTHER:PTHR10366:SF369
PFAM:PF01370ProteinID:CDY57397ProteinID:CDY57397.1SEG:segSUPFAM:SSF51735TMHMM:TMhelix
UniParc:UPI0004EF3F97UniProt:A0A078J265MapMan:35.1:::
Description
BnaCnng32000DBnaCnng32000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J265]
Coordinates
chrLK033571:+:42508..44127
Molecular Weight (calculated)
35197.4 Da
IEP (calculated)
5.836
GRAVY (calculated)
0.016
Length
323 amino acids
Sequence
(BLAST)
001: MSTEREVVCV TGASGCIGSW LVHLLLLRGY SVHATVKNLQ DEKETKHLEA LEGAATRLHL FEMDLLKYDT VSAAVNGCAG VFHLASPCIV DAVQDPQKQL
101: LDPAVKGTLN VLTAAKEAGV KRVVVTSSVS AITPSPNWPA DKIKNEECWA DEDFCKQNGL WYPLSKTLAE KAAWEFAEEK GLDVVVVNPG TVMGPVIPPS
201: INASLLMLQR LLEGCTETYE NFFMGSVHFK DVALAHILVY ENPSAKGRHL CVEAISHYGD FVAKVAELYP NYSVPKLPRE TQPGLLRANN AAKKLMELGL
301: EFSSTEVIIK DGVESLKSKG FIS
Best Arabidopsis Sequence Match ( AT5G58490.1 )
(BLAST)
001: MLTDEREVVC VTGASGCIGS WLVHQLLLRG YSVHATVKNL QDEKETKHLE GLEGAATRLH LFEMDLLQYD TVSAAINGCS GVFHLASPCI VDEVQDPQKQ
101: LLDPAVKGTI NVLTAAKEAS VKRVVVTSSI SAITPSPNWP ADKIKNEECW AAEDYCRQNG LWYPLSKTLA EKAAWEFAEE KGLDVVVVNP GTVMGPVIPP
201: SLNASMHMLL RLLQGCTETY ENFFMGSVHF KDVALAHILV YEDPYSKGRH LCVEAISHYG DFVAKVAELY PNYNVPKLPR ETQPGLLRDK NASKKLIDLG
301: LKFISMEEII KEGVESLKSK GFIS
Arabidopsis Description
Cinnamoyl-CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FGH3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.