CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42105	Canola	cytosol, plastid	97.82	97.82
AT1G25460.1	Thale cress	cytosol, plastid	82.24	82.76
CDY42108	Canola	cytosol	60.12	82.13
CDX84988	Canola	cytosol	77.88	81.97
CDX69634	Canola	cytosol	69.78	69.78
CDY38590	Canola	cytosol	69.78	69.78
CDX96012	Canola	cytosol, nucleus, peroxisome	69.16	69.16
KRH75363	Soybean	cytosol	65.11	65.52
VIT_01s0011g03480.t01	Wine grape	cytosol, plastid	64.17	64.38
Solyc01g068080.2.1	Tomato	cytosol, extracellular, plastid	62.62	62.81
KRH49476	Soybean	cytosol	61.99	62.38
PGSC0003DMT400013318	Potato	cytosol, extracellular, plastid	61.99	62.19
GSMUA_Achr6P09630_001	Banana	cytosol	58.57	58.75
EES02561	Sorghum	cytosol	57.63	56.92
TraesCS3B01G036600.1	Wheat	cytosol	57.32	55.93
TraesCS3A01G046700.1	Wheat	cytosol	57.32	55.93
TraesCS3D01G033300.1	Wheat	cytosol	56.7	55.32
Os01t0127500-01	Rice	cytosol	55.45	52.82
HORVU3Hr1G004270.1	Barley	mitochondrion	38.32	51.25
CDY41656	Canola	cytosol, plastid, vacuole	42.37	42.9
CDX75502	Canola	cytosol, extracellular, plastid	42.37	42.63
CDX69139	Canola	cytosol, extracellular, plastid	42.06	42.32
CDY24810	Canola	cytosol	41.74	42.27
CDY35052	Canola	cytosol	33.96	39.49
CDY14000	Canola	cytosol	39.25	38.65
CDY43911	Canola	cytosol	38.63	38.15
CDX92530	Canola	cytosol	38.94	37.88
CDY22576	Canola	cytosol	38.32	37.85
CDY03618	Canola	cytosol	38.01	37.54
CDY65726	Canola	cytosol	38.01	37.54
CDX81743	Canola	cytosol	38.32	36.18
CDY52857	Canola	cytosol	38.32	35.86
CDY33365	Canola	cytosol	38.32	35.86
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	35.83	35.49
CDY63972	Canola	cytosol	36.45	35.35
CDY39941	Canola	cytosol	36.45	35.24
CDX87345	Canola	cytosol	36.45	35.24
CDY64860	Canola	cytosol	36.14	35.05
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	34.89	34.78
CDX94967	Canola	plasma membrane	34.58	34.47
CDX94968	Canola	endoplasmic reticulum, golgi, plastid	34.89	34.36
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	34.27	34.16
CDY45844	Canola	cytosol, golgi, peroxisome	34.58	34.15
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	34.58	34.15
CDX94965	Canola	golgi	34.58	34.15
CDY32979	Canola	cytosol, endoplasmic reticulum, peroxisome	33.33	33.13
CDY57397	Canola	cytosol, endoplasmic reticulum, peroxisome	33.02	32.82
CDY15830	Canola	cytosol	31.15	31.15
CDY09372	Canola	cytosol	30.84	30.84
CDY64748	Canola	cytosol	35.51	30.48

Protein Annotations

EnsemblPlants:CDX84989	EnsemblPlantsGene:GSBRNA2T00142400001	Gene3D:3.40.50.720	GO:A0A078D9P4	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF503
PFAM:PF01370	ProteinID:CDX84989	ProteinID:CDX84989.1	SUPFAM:SSF51735	UniParc:UPI0004EBD247	MapMan:21.8.1.5

Description

BnaC05g20660D

Coordinates

chrLK031839:+:1242525..1244129

Molecular Weight (calculated)

35847.9 Da

IEP (calculated)

5.471

GRAVY (calculated)

-0.171

Length

321 amino acids

Sequence
(BLAST)

001: MAEYLVTGGT SFIASHVVKA LLDLGHSVRT TVRDSSDEEK VRFLWELKGA KERLKIFEAD LTVEGSFDEA VKGVDGVFHI ASRVTVCLDN NDLEKLVDRD
101: INGTRNLMNS CEKSRNTVKR IVLTSSSTSV RYRYDATEAS PLDESHYSDL DYCRNFKIWY GYAKTLGEKE AWTIAAEKNL DIVVVIPSFC IGPILSPEPT
201: SSPLILLSII KGVRGDYPNV TGGFVHIEDV VAAQILAMEK PKASGRFICS SSVAHWSEII EMLRPKYPLY PFETKCSSEE GKDMPHSLDT TKIRELGLPP
301: FKSLAEMFDD CIKCFQDKGL L

Best Arabidopsis Sequence Match ( AT1G25460.1 )
(BLAST)

001: MAEYLVTGGT SFIASHVIKS LLEFGHYVRT TVRDSDEEKV GFLWDLKGAK ERLKIFEADL TIEGSFDEAV NGVDGVFHIA SRVSVRLDNN NLDKFDPNIS
101: GTMNVMNSCA KSRNTVKRIV LTSSSTAIRY RFDATQVSPL NESHWTDLEY CKHFKIWYAY KKTLGEKEAW RIAADKKLNL VVVIPSFCIG PILSPKPTSS
201: PLIFLSIIKG TRGTYPNFRG GFVHIDDVVA AQILAMEEPK ASGRILCSSS VAHWSEIIEM LRIKYPLYPF ETKCGSEEGK DMPHSLDTTK IHELGFASFK
301: SLTEMFDDCI KCFQDKGLL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G25460]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.