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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, peroxisome
Any Predictor:cytosol, endoplasmic reticulum, peroxisome
BaCelLo:cytosol
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45844 Canola cytosol, golgi, peroxisome 96.31 96.31
AT1G09500.1 Thale cress endoplasmic reticulum 76.0 76.0
CDY68009 Canola cytosol, endoplasmic reticulum, golgi 74.77 75.47
CDX94966 Canola golgi, mitochondrion, peroxisome, plastid 66.77 67.39
CDX94965 Canola golgi 67.38 67.38
CDY64747 Canola extracellular, golgi, mitochondrion, plastid 67.08 67.28
CDX94968 Canola endoplasmic reticulum, golgi, plastid 65.23 65.03
CDX94967 Canola plasma membrane 64.0 64.6
TraesCS4A01G331600.1 Wheat cytosol, golgi, plastid 41.23 61.47
CDY65726 Canola cytosol 57.54 57.54
CDY03618 Canola cytosol 57.54 57.54
CDY64748 Canola cytosol 66.15 57.49
CDY14000 Canola cytosol 57.54 57.36
CDY22576 Canola cytosol 56.92 56.92
CDY43911 Canola cytosol 56.62 56.62
CDX92530 Canola cytosol 56.92 56.06
GSMUA_Achr8P24060_001 Banana plastid 55.38 55.73
Solyc01g087640.2.1 Tomato cytosol 55.69 55.18
GSMUA_Achr8P24070_001 Banana golgi, plastid 54.77 55.11
GSMUA_Achr4P10200_001 Banana cytosol, golgi, plastid 55.08 54.57
GSMUA_Achr8P24040_001 Banana plastid 54.15 54.49
VIT_13s0067g00590.t01 Wine grape endoplasmic reticulum, golgi 54.15 53.82
VIT_13s0067g00620.t01 Wine grape endoplasmic reticulum, golgi 53.85 53.52
TraesCS5B01G547200.1 Wheat unclear 54.15 53.33
TraesCS5D01G540800.1 Wheat plastid 53.54 52.73
TraesCS5D01G541100.1 Wheat golgi 53.54 52.73
TraesCS4A01G331900.2 Wheat golgi, unclear 53.54 52.73
TraesCS5B01G547000.1 Wheat golgi 52.31 51.52
KXG30065 Sorghum plastid 52.92 51.5
Os01t0528800-01 Rice cytosol, endoplasmic reticulum, plastid 53.23 51.49
TraesCS4D01G343400.1 Wheat cytosol 53.54 51.33
HORVU5Hr1G122150.1 Barley plastid 55.08 49.72
TraesCS5A01G517000.1 Wheat mitochondrion 52.92 47.65
HORVU4Hr1G085100.1 Barley cytosol 54.46 47.58
CDY35052 Canola cytosol 39.08 46.01
TraesCS5B01G546700.1 Wheat peroxisome, plastid 31.69 45.58
Zm00001d015956_P002 Maize plastid 52.92 44.91
CDX81743 Canola cytosol 46.15 44.12
CDX87345 Canola cytosol 44.92 43.98
CDY39941 Canola cytosol 44.92 43.98
CDY63972 Canola cytosol 44.62 43.81
CDY33365 Canola cytosol 46.15 43.73
CDY52857 Canola cytosol 45.85 43.44
CDY24810 Canola cytosol 42.15 43.22
CDY64860 Canola cytosol 44.0 43.2
CDX75502 Canola cytosol, extracellular, plastid 41.85 42.63
CDX69139 Canola cytosol, extracellular, plastid 41.54 42.32
CDY41656 Canola cytosol, plastid, vacuole 40.62 41.64
CDY57397 Canola cytosol, endoplasmic reticulum, peroxisome 40.0 40.25
CDY32979 Canola cytosol, endoplasmic reticulum, peroxisome 39.38 39.63
CDX69634 Canola cytosol 36.31 36.76
CDY38590 Canola cytosol 36.0 36.45
CDX96012 Canola cytosol, nucleus, peroxisome 36.0 36.45
CDY09372 Canola cytosol 34.77 35.2
CDY42105 Canola cytosol, plastid 34.46 34.89
CDX84989 Canola cytosol 34.15 34.58
CDY15830 Canola cytosol 33.54 33.96
CDX84988 Canola cytosol 30.77 32.79
CDY42108 Canola cytosol 19.38 26.81
Protein Annotations
EnsemblPlants:CDY72415EnsemblPlantsGene:GSBRNA2T00028552001Gene3D:3.40.50.720GO:A0A078K135GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0050662InterPro:Epimerase_deHydtaseInterPro:NAD(P)-bd_dom_sfncoils:CoilPANTHER:PTHR10366
PANTHER:PTHR10366:SF492PFAM:PF01370ProteinID:CDY72415ProteinID:CDY72415.1SUPFAM:SSF51735UniParc:UPI0004EF12F4
UniProt:A0A078K135MapMan:35.1::::
Description
BnaCnng77500DBnaCnng77500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K135]
Coordinates
chrLK050884:-:425..1949
Molecular Weight (calculated)
35637.1 Da
IEP (calculated)
4.837
GRAVY (calculated)
0.024
Length
325 amino acids
Sequence
(BLAST)
001: MNVEGKVVCV TGASGYIASW IVKLLLQRGY TVRATVRDPN DQKKTEHLLA LDGAEERLSL FKANLLEEGS FEHAIDGCEA VFHTASPVLL TAEDPQAELI
101: EPAVKGTLNV LKTCVKMSSV KRVILTSSMA AVIAHASPTG PNGVVDETMF SDPSFCEQRK QWYALSKTLA EDEACKFAKA NEMDLIVMNP GLVIGPILQP
201: TLNFSVAVVV ELTKGKDPFM SKSYRFVDVR DVSLAHIKAL ETPSANGRYI IDGPVIATLK DIEKVLREFV PDLCIGDDKN NEDIDLDLVT YKVSVEKVKT
301: LGIEFTPTET SLRDTVFSLQ EKCLL
Best Arabidopsis Sequence Match ( AT1G09500.1 )
(BLAST)
001: MADGGKVVCV TGASGYIASW IVKLLLFRGY TINATVRDPK DRKKTDHLLA LDGAKERLKL FKADLLDEGS FELAIDGCET VFHTASPVAI TVKTDPQVEL
101: INPAVNGTIN VLRTCTKVSS VKRVILTSSM AAVLAPETKL GPNDVVDETF FTNPSFAEER KQWYVLSKTL AEDAAWRFAK DNEIDLIVLN PGLVTGPILQ
201: PTLNFSVAVI VELMKGKNPF NTTHHRFVDV RDVALAHVKA LETPSANGRY IIDGPVVTIK DIENVLREFF PDLCIADRNE DITELNSVTF NVCLDKVKSL
301: GIIEFTPTET SLRDTVLSLK EKCLV
Arabidopsis Description
At1g09500/F14J9_16 [Source:UniProtKB/TrEMBL;Acc:O80533]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.