Factsheet for TraesCS5B01G547200.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	peroxisome, plastid
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G541100.1	Wheat	golgi	98.48	98.48
TraesCS4A01G331600.1	Wheat	cytosol, golgi, plastid	63.94	96.79
TraesCS5B01G546700.1	Wheat	peroxisome, plastid	65.15	95.13
TraesCS5B01G547000.1	Wheat	golgi	91.52	91.52
HORVU5Hr1G122150.1	Barley	plastid	93.64	85.83
Os01t0528800-01	Rice	cytosol, endoplasmic reticulum, plastid	83.64	82.14
KXG30065	Sorghum	plastid	80.3	79.34
GSMUA_Achr8P24070_001	Banana	golgi, plastid	70.91	72.45
GSMUA_Achr8P24040_001	Banana	plastid	69.7	71.21
GSMUA_Achr8P24060_001	Banana	plastid	68.79	70.28
Zm00001d015956_P002	Maize	plastid	80.91	69.71
GSMUA_Achr4P10200_001	Banana	cytosol, golgi, plastid	68.48	68.9
VIT_03s0110g00350.t01	Wine grape	cytosol	66.06	67.28
VIT_13s0064g00290.t01	Wine grape	cytosol, extracellular, plastid	43.33	66.2
VIT_13s0047g00940.t01	Wine grape	cytosol	63.03	64.4
VIT_13s0047g00540.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	62.12	63.47
VIT_13s0064g00270.t01	Wine grape	cytosol, endoplasmic reticulum	61.52	62.27
VIT_13s0067g00620.t01	Wine grape	endoplasmic reticulum, golgi	60.0	60.55
VIT_13s0101g00240.t01	Wine grape	cytosol	46.97	60.08
VIT_13s0067g00530.t01	Wine grape	endoplasmic reticulum	59.09	59.82
VIT_13s0067g00460.t01	Wine grape	endoplasmic reticulum	59.09	59.82
VIT_13s0067g00590.t01	Wine grape	endoplasmic reticulum, golgi	59.09	59.63
VIT_15s0107g00210.t01	Wine grape	extracellular, plastid	60.0	57.39
VIT_13s0101g00250.t01	Wine grape	cytosol	48.79	57.3
Solyc01g087640.2.1	Tomato	cytosol	56.06	56.4
VIT_13s0067g00680.t01	Wine grape	cytosol	46.67	55.6
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	53.64	54.97
AT1G66800.1	Thale cress	peroxisome, plasma membrane, plastid	53.03	54.86
Bra031666.1-P	Field mustard	golgi	52.42	54.75
Bra038342.1-P	Field mustard	cytosol, golgi, peroxisome	53.64	54.46
CDY45844	Canola	cytosol, golgi, peroxisome	53.64	54.46
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	53.33	54.15
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	52.73	54.04
AT1G09510.1	Thale cress	cytosol, plastid, vacuole	52.73	54.04
CDX94965	Canola	golgi	52.73	53.54
AT1G09490.1	Thale cress	golgi	51.82	53.11
Bra020021.1-P	Field mustard	golgi	51.82	53.11
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	52.12	53.09
VIT_13s0067g00690.t01	Wine grape	cytosol	49.7	53.07
AT1G09500.1	Thale cress	endoplasmic reticulum	51.82	52.62
Bra020019.1-P	Field mustard	extracellular, golgi	51.82	52.45
CDX94967	Canola	plasma membrane	50.91	52.17
Bra020020.1-P	Field mustard	extracellular, golgi	50.91	52.17
VIT_13s0047g00550.t01	Wine grape	mitochondrion, vacuole	53.03	50.72
CDX94968	Canola	endoplasmic reticulum, golgi, plastid	50.0	50.61
AT1G09480.1	Thale cress	cytosol	52.12	46.61
CDY64748	Canola	cytosol	52.12	45.99
TraesCS5B01G223700.2	Wheat	cytosol	48.18	44.54
TraesCS7B01G141100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.94	44.07
TraesCS5B01G486500.1	Wheat	cytosol	43.33	43.33
TraesCS3B01G380600.1	Wheat	cytosol	41.82	41.82
TraesCS6B01G420500.1	Wheat	cytosol	42.73	41.72
TraesCS5B01G069600.1	Wheat	cytosol, mitochondrion, peroxisome	42.12	41.37
TraesCS3B01G380500.1	Wheat	cytosol	40.61	40.98
TraesCS5B01G271500.1	Wheat	mitochondrion	43.03	40.8
TraesCS5B01G069500.1	Wheat	cytosol	41.82	40.71
TraesCS5B01G160700.1	Wheat	cytosol	44.85	40.55
TraesCS6B01G420900.1	Wheat	peroxisome	41.82	40.23
TraesCS6B01G420200.1	Wheat	cytosol	41.52	39.71
TraesCS7B01G052700.1	Wheat	plastid	43.94	39.3
TraesCS6B01G420000.1	Wheat	cytosol	40.3	38.55
TraesCS5B01G414300.1	Wheat	cytosol	38.48	37.91
TraesCS3B01G036600.1	Wheat	cytosol	37.58	37.69
TraesCS7B01G052600.1	Wheat	cytosol	44.24	37.15
TraesCS6B01G175600.2	Wheat	plastid	40.61	34.99
TraesCS5B01G414500.1	Wheat	mitochondrion, plastid	38.18	34.62
VIT_13s0047g00990.t01	Wine grape	endoplasmic reticulum	62.73	33.93

Protein Annotations

EnsemblPlants:TraesCS5B01G547200.1	EnsemblPlantsGene:TraesCS5B01G547200	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF407	PFAM:PF01370
SUPFAM:SSF51735	TIGR:cd08958	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:700230846..700234826

Molecular Weight (calculated)

36359.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.072

Length

330 amino acids

Sequence
(BLAST)

001: MSSGTGKVVC VTGASGYIAS WLVKFLLQRG YTVRATVRDT ADPKKTLHLQ ALDGAKDRLH LFKASLLEEG SFDDAVAGCD CVFHTASPFY HNVKDPKAEL
101: LDPAVNGTLN VLRSCKKASI KRVIVTSSMA AVAYNGKPRT PDVVVDETWF SSAEVCEKNK QWYVLSKTLA EEAAWKYADD NGLEIITINP TMVIGPLLQP
201: TLNTSTEAIL KFINGSSSTY ANFCFGWINV KDVALAHILA YEVPSANGRY CMVERVIHHS DLVKIIHEMY PEFPVPDKCA DDAPFATIYQ VSKNKIRSLG
301: MELTPLETSL KETIESLREK GFVTSESSHL

Best Arabidopsis Sequence Match ( AT1G09480.1 )
(BLAST)

001: MMHEMAYKVC VEKVKSLGIE FTTPIEETLR DTIVSLMEDY KERSKEIMNG GGKLVCVTGA SGYIASWIVK LLLLRGYTVK ATVRDLTDRK KTEHLLALDG
101: AKERLKLFKA DLLEESSFEQ AIEGCDAVFH TASPVFFTVK DPQTELIDPA LKGTMNVLNT CKETPSVRRV ILTSSTAAVL FRQPPVEASD VVDETFFSDP
201: SLCRETKNWY PLSKILAENA AWEFAKDNGI DMVVLNPGFI FGPLLQPTLN FSVELIVDFI NGKNPFNSRF YRFVDVRDVA LAHIKALETP SANGRYIIDG
301: PIMSVSDIID ILRELLPDLC IADTNEESVM NEMLCKVCVE KVKNLGVEFT PMKSSLRDTI VSLKEKCLL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I0Z5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.