CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69634	Canola	cytosol	97.51	97.51
CDX96012	Canola	cytosol, nucleus, peroxisome	96.26	96.26
AT1G68540.1	Thale cress	cytosol	91.28	91.28
KRH75363	Soybean	cytosol	72.59	73.04
VIT_01s0011g03480.t01	Wine grape	cytosol, plastid	72.27	72.5
PGSC0003DMT400013318	Potato	cytosol, extracellular, plastid	70.72	70.94
KRH49476	Soybean	cytosol	70.41	70.85
Solyc01g068080.2.1	Tomato	cytosol, extracellular, plastid	70.41	70.62
CDY42105	Canola	cytosol, plastid	70.41	70.41
CDX84989	Canola	cytosol	69.78	69.78
CDY42108	Canola	cytosol	49.53	67.66
GSMUA_Achr6P09630_001	Banana	cytosol	66.98	67.19
CDX84988	Canola	cytosol	63.24	66.56
EES02561	Sorghum	cytosol	63.24	62.46
TraesCS3D01G033300.1	Wheat	cytosol	62.31	60.79
TraesCS3B01G036600.1	Wheat	cytosol	62.31	60.79
TraesCS3A01G046700.1	Wheat	cytosol	61.68	60.18
Os01t0127500-01	Rice	cytosol	59.81	56.97
HORVU3Hr1G004270.1	Barley	mitochondrion	40.5	54.17
CDX75502	Canola	cytosol, extracellular, plastid	46.42	46.71
CDY41656	Canola	cytosol, plastid, vacuole	45.79	46.37
CDX69139	Canola	cytosol, extracellular, plastid	45.79	46.08
CDY24810	Canola	cytosol	45.48	46.06
CDY35052	Canola	cytosol	37.38	43.48
CDY14000	Canola	cytosol	42.68	42.02
CDX92530	Canola	cytosol	42.06	40.91
CDY43911	Canola	cytosol	41.12	40.62
CDY22576	Canola	cytosol	40.81	40.31
CDY65726	Canola	cytosol	40.5	40.0
CDX81743	Canola	cytosol	42.37	40.0
CDY03618	Canola	cytosol	40.5	40.0
CDY52857	Canola	cytosol	42.68	39.94
CDY63972	Canola	cytosol	41.12	39.88
CDY39941	Canola	cytosol	41.12	39.76
CDX87345	Canola	cytosol	41.12	39.76
CDY33365	Canola	cytosol	42.37	39.65
CDY64860	Canola	cytosol	40.5	39.27
CDX94967	Canola	plasma membrane	38.94	38.82
CDX94965	Canola	golgi	39.25	38.77
CDX94968	Canola	endoplasmic reticulum, golgi, plastid	39.25	38.65
CDY64747	Canola	extracellular, golgi, mitochondrion, plastid	38.94	38.58
CDX94966	Canola	golgi, mitochondrion, peroxisome, plastid	38.01	37.89
CDY57397	Canola	cytosol, endoplasmic reticulum, peroxisome	37.69	37.46
CDY32979	Canola	cytosol, endoplasmic reticulum, peroxisome	37.07	36.84
CDY68009	Canola	cytosol, endoplasmic reticulum, golgi	36.14	36.02
CDY72415	Canola	cytosol, endoplasmic reticulum, peroxisome	36.45	36.0
CDY45844	Canola	cytosol, golgi, peroxisome	35.83	35.38
CDY64748	Canola	cytosol	38.94	33.42
CDY15830	Canola	cytosol	32.4	32.4
CDY09372	Canola	cytosol	32.09	32.09

Protein Annotations

EnsemblPlants:CDY38590	EnsemblPlantsGene:GSBRNA2T00066274001	Gene3D:3.40.50.720	GO:A0A078HJG0	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	ncoils:Coil	PANTHER:PTHR10366
PANTHER:PTHR10366:SF503	PFAM:PF01370	ProteinID:CDY38590	ProteinID:CDY38590.1	SUPFAM:SSF51735	UniParc:UPI0004EAFBDA
UniProt:A0A078HJG0	MapMan:21.8.1.5	:	:	:	:

Description

BnaC06g30130DBnaC06g30130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJG0]

Coordinates

chrLK032427:+:142464..143833

Molecular Weight (calculated)

35787.9 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.219

Length

321 amino acids

Sequence
(BLAST)

001: MSEYLVTGGT GFIASYIIKS LLELGHTVRT TVRNPQDEEK VGFLWELKGA KERLKMFKAD LTAEGSFDEP VNGVDGVFHT ASPVIVPQDH NIQETLVDPI
101: IKGTTNVMNS CAKSKTTLKR IVLTSSCSSI RYRFDATKAS PLNESHWSDP DYCKRFNLWY AYAKTLGEKE AWRIAEEKGL NLVVVNPSFV VGPLLGPKPT
201: STLLYILAIV KGLAGEYRNL TVGFVHIDDV VAAHVLAMEE PKASGRIVCS SSVAHWSEII ELLRNKYPNY PLENKCSNKE GDNNPHSMDT RKIHELGFAS
301: FKSLPEMFDD CIRSFQEKGL L

Best Arabidopsis Sequence Match ( AT1G68540.1 )
(BLAST)

001: MSEYLVTGGT GFIASYIIKS LLELGHTVRT TVRNPRDEEK VGFLWEFQGA KQRLKILQAD LTVEGSFDEA VNGVDGVFHT ASPVLVPQDH NIQETLVDPI
101: IKGTTNVMSS CAKSKATLKR IVLTSSCSSI RYRFDATEAS PLNESHWSDP EYCKRFNLWY GYAKTLGERE AWRIAEEKGL DLVVVNPSFV VGPLLGPKPT
201: STLLMILAIA KGLAGEYPNF TVGFVHIDDV VAAHVLAMEE PKASGRIICS SSVAHWSEII ELMRNKYPNY PFENKCSNKE GDNSPHSMDT RKIHELGFGS
301: FKSLPEMFDD CIISFQKKGL L

Arabidopsis Description

TKPR2TKPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W2A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.