Factsheet for PGSC0003DMT400065273

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072510.1.1	Tomato	cytosol, extracellular	97.84	97.84
VIT_06s0004g07130.t01	Wine grape	cytosol	79.01	77.81
Bra002645.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	74.38	74.61
KRH72740	Soybean	cytosol	72.84	73.75
CDY32979	Canola	cytosol, endoplasmic reticulum, peroxisome	73.46	73.68
CDY57397	Canola	cytosol, endoplasmic reticulum, peroxisome	72.53	72.76
AT5G58490.1	Thale cress	cytosol	72.53	72.53
GSMUA_Achr4P18740_001	Banana	cytosol, extracellular, plastid	69.75	70.85
KRH17091	Soybean	cytosol, golgi, plastid	71.6	64.44
TraesCS5D01G486300.2	Wheat	cytosol	63.27	62.12
Os03t0818200-01	Rice	cytosol	63.89	61.98
TraesCS5B01G486500.1	Wheat	cytosol	62.96	61.82
KXG37270	Sorghum	cytosol	62.35	61.59
TraesCS5A01G473600.1	Wheat	cytosol	62.65	61.52
EER93204	Sorghum	cytosol	62.35	61.21
Zm00001d012980_P001	Maize	cytosol	60.19	58.91
Zm00001d012982_P001	Maize	cytosol	63.89	55.5
HORVU5Hr1G112340.7	Barley	cytosol, plastid	62.96	54.4
PGSC0003DMT400051049	Potato	endoplasmic reticulum, peroxisome, plastid	46.6	45.48
PGSC0003DMT400046912	Potato	cytosol, endoplasmic reticulum, plastid	29.32	45.45
PGSC0003DMT400073398	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	45.06	43.98
PGSC0003DMT400065107	Potato	cytosol	41.05	39.7
Zm00001d012981_P002	Maize	cytosol	50.93	37.25
PGSC0003DMT400013318	Potato	cytosol, extracellular, plastid	35.49	35.94

Protein Annotations

EMBL:DQ200368	EnsemblPlants:PGSC0003DMT400065273	EnsemblPlantsGene:PGSC0003DMG400025373	EntrezGene:102602150	Gene3D:3.40.50.720	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366
PANTHER:PTHR10366:SF369	PFAM:PF01370	PGSC:PGSC0003DMG400025373	ProteinID:ABA46761	ProteinID:ABA46761.1	RefSeq:NP_001275236.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI00005C5020	UniProt:Q3HRZ0	MapMan:35.1	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400025373]

Coordinates

chr11:+:44336441..44339472

Molecular Weight (calculated)

35678.9 Da

IEP (calculated)

4.812

GRAVY (calculated)

-0.068

Length

324 amino acids

Sequence
(BLAST)

001: MANGEGEVVC VTGGSGFIGS WLVSSLLERG YTVHATVKDL NDEKETKHLL ALDGAESRLR LYQIDLLDYD SIVSAITGAV GVFHLASPCT VDEVKDPEND
101: LLSPAIKGTS NVLTASKELG VKRVVVTSSV SSITPNPNWP ADRIMNEDCW TDIEYCKQNG VWYPLSKTLA EKDAWKFAEE KDLDIVVVNP GTVMGPIIPP
201: SLNASMQMIL RLLQGCTDTY QDFFMGLVHV KDVALAHILV YENKSAKGRH MCVEAITHYG DFAAKVAELY PEYNIPRLPK DTQPGLLRAK DGAKKLMDLG
301: LEFIEMEQII RDAVESLKIK GYIS

Best Arabidopsis Sequence Match ( AT5G58490.1 )
(BLAST)

001: MLTDEREVVC VTGASGCIGS WLVHQLLLRG YSVHATVKNL QDEKETKHLE GLEGAATRLH LFEMDLLQYD TVSAAINGCS GVFHLASPCI VDEVQDPQKQ
101: LLDPAVKGTI NVLTAAKEAS VKRVVVTSSI SAITPSPNWP ADKIKNEECW AAEDYCRQNG LWYPLSKTLA EKAAWEFAEE KGLDVVVVNP GTVMGPVIPP
201: SLNASMHMLL RLLQGCTETY ENFFMGSVHF KDVALAHILV YEDPYSKGRH LCVEAISHYG DFVAKVAELY PNYNVPKLPR ETQPGLLRDK NASKKLIDLG
301: LKFISMEEII KEGVESLKSK GFIS

Arabidopsis Description

Cinnamoyl-CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FGH3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.