Factsheet for PGSC0003DMT400065107

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008780.2.1	Tomato	cytosol	98.51	97.63
VIT_03s0038g04220.t01	Wine grape	endoplasmic reticulum	71.04	73.68
CDX75502	Canola	cytosol, extracellular, plastid	68.36	71.79
CDY24810	Canola	cytosol	67.76	71.61
CDX69139	Canola	cytosol, extracellular, plastid	68.06	71.47
AT4G35420.1	Thale cress	extracellular	69.25	71.17
Bra010535.1-P	Field mustard	cytosol	65.37	70.65
CDY41656	Canola	cytosol, plastid, vacuole	66.57	70.35
GSMUA_AchrUn_...	Banana	cytosol	65.67	67.69
KRH23414	Soybean	mitochondrion	65.07	65.86
KRH09917	Soybean	mitochondrion	65.07	65.66
EER99113	Sorghum	mitochondrion	64.18	65.35
Zm00001d020970_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.48	65.26
Os08t0515900-01	Rice	cytosol	56.72	64.41
TraesCS7B01G141100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.79	62.92
TraesCS7D01G248800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.49	62.61
VIT_03s0038g04230.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.57	62.15
TraesCS5A01G271200.1	Wheat	mitochondrion	62.69	60.34
TraesCS5B01G271500.1	Wheat	mitochondrion	62.69	60.34
TraesCS5D01G278800.1	Wheat	mitochondrion	62.39	60.06
EES14250	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.0	60.0
Os09t0493500-02	Rice	plastid	62.39	57.1
TraesCS7A01G250100.1	Wheat	cytosol, mitochondrion, plastid	62.09	55.32
PGSC0003DMT400013318	Potato	cytosol, extracellular, plastid	45.67	47.81
Zm00001d031488_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	48.06	46.94
PGSC0003DMT400051049	Potato	endoplasmic reticulum, peroxisome, plastid	42.99	43.37
PGSC0003DMT400073398	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	41.19	41.57
PGSC0003DMT400065273	Potato	cytosol	39.7	41.05
PGSC0003DMT400046912	Potato	cytosol, endoplasmic reticulum, plastid	20.3	32.54

Protein Annotations

MapMan:21.8.1.5	Gene3D:3.40.50.720	InterPro:Epimerase_deHydtase	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010584	GO:GO:0016043	GO:GO:0048316	GO:GO:0050662
GO:GO:0080110	UniProt:M1CDF1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	EnsemblPlantsGene:PGSC0003DMG400025307	PGSC:PGSC0003DMG400025307
EnsemblPlants:PGSC0003DMT400065107	PANTHER:PTHR10366	PANTHER:PTHR10366:SF493	SUPFAM:SSF51735	InterPro:TKPR1	UniParc:UPI0002950101
SEG:seg	:	:	:	:	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400025307]

Coordinates

chr4:+:3924805..3927853

Molecular Weight (calculated)

37458.1 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.147

Length

335 amino acids

Sequence
(BLAST)

001: MEDKSVVIEE NSNYKGKVCV TGASGFVASW LIKRLLLSGY NVIGTVRDPG NQKKVGHLWK LQGAKERLRL VKANLTDEGS FDDAIMGCEG VFHTASPVLG
101: KATFDVTVEI LNPAVDGTLN VLRSCKKNPR LRRVVLTSSS STVRVRDNID PNIPLDESSW SSVEFCKKFE IWYVLSKTLA EKAAWEFCEQ NNIDLVTLLP
201: SFIIGPSLPP DLCSTADDVL GLLKGKTDKF DFHGRMGYVH IDDVALSHIL VYEHPSAHGR YLCSSKVLDN NQLVSVLSER YPSLPIPKRF KELDRPSYDF
301: NTLKLEGLGM KFKSIEEMFD DCVTFFKERG LISSI

Best Arabidopsis Sequence Match ( AT4G35420.1 )
(BLAST)

001: MDQAKGKVCV TGASGFLASW LVKRLLLEGY EVIGTVRDPG NEKKLAHLWK LEGAKERLRL VKADLMEEGS FDNAIMGCQG VFHTASPVLK PTSNPEEEIL
101: RPAIEGTLNV LRSCRKNPSL KRVVLTSSSS TVRIRDDFDP KIPLDESIWT SVELCKRFQV WYALSKTLAE QAAWKFSEEN GIDLVTVLPS FLVGPSLPPD
201: LCSTASDVLG LLKGETEKFQ WHGQMGYVHI DDVARTHIVV FEHEAAQGRY ICSSNVISLE ELVSFLSARY PSLPIPKRFE KLNRLHYDFD TSKIQSLGLK
301: FKSLEEMFDD CIASLVEQGY LSTVLP

Arabidopsis Description

TKPR1Tetraketide alpha-pyrone reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q500U8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.