Factsheet for TraesCS5D01G278800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G182300.1
TraesCS4B01G136100.2
TraesCS4D01G130900.1
TraesCS5A01G153500.1
TraesCS5B01G152300.1
TraesCS5D01G158800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35420.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT4G35420.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT4G35420.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT4G35420.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT4G35420.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT4G35420.1	TraesCS5D01G158800.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G271500.1	Wheat	mitochondrion	99.43	99.43
TraesCS5A01G271200.1	Wheat	mitochondrion	98.56	98.56
EER99113	Sorghum	mitochondrion	79.6	84.19
Zm00001d020970_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.59	81.57
Os09t0493500-02	Rice	plastid	81.61	77.6
TraesCS7D01G248800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.52	69.3
VIT_03s0038g04220.t01	Wine grape	endoplasmic reticulum	60.63	65.33
GSMUA_AchrUn_...	Banana	cytosol	60.34	64.62
AT4G35420.1	Thale cress	extracellular	58.91	62.88
PGSC0003DMT400065107	Potato	cytosol	60.06	62.39
Solyc04g008780.2.1	Tomato	cytosol	60.06	61.83
CDY24810	Canola	cytosol	55.75	61.2
CDY41656	Canola	cytosol, plastid, vacuole	55.75	61.2
CDX69139	Canola	cytosol, extracellular, plastid	55.75	60.81
CDX75502	Canola	cytosol, extracellular, plastid	55.75	60.81
Bra010535.1-P	Field mustard	cytosol	54.02	60.65
KRH09917	Soybean	mitochondrion	56.9	59.64
KRH23414	Soybean	mitochondrion	56.61	59.52
VIT_03s0038g04230.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.08	54.18
TraesCS3D01G033300.1	Wheat	cytosol	41.38	43.77
TraesCS4D01G343400.1	Wheat	cytosol	41.95	43.07
TraesCS5D01G540800.1	Wheat	plastid	39.94	42.12
TraesCS5D01G541100.1	Wheat	golgi	39.94	42.12
TraesCS5D01G073300.1	Wheat	cytosol	37.93	39.29
TraesCS7D01G150500.1	Wheat	cytosol	38.22	39.0
TraesCS7D01G150600.1	Wheat	cytosol	38.22	38.78
TraesCS5D01G232400.1	Wheat	cytosol, peroxisome, plastid	39.08	38.75
TraesCS5D01G073400.1	Wheat	cytosol	37.64	38.64
TraesCS6D01G369500.1	Wheat	peroxisome	37.07	37.72
TraesCS6D01G366200.1	Wheat	cytosol	37.07	37.39
TraesCS6D01G365900.1	Wheat	cytosol	36.21	37.28
TraesCS6D01G366400.1	Wheat	cytosol	35.63	37.24
TraesCS6D01G365700.1	Wheat	cytosol	36.49	36.81
TraesCS5D01G168400.1	Wheat	cytosol	37.64	36.69
TraesCS5D01G486300.2	Wheat	cytosol	33.33	35.15
TraesCS6D01G136600.2	Wheat	extracellular, vacuole	34.48	34.88
TraesCS3D01G342200.2	Wheat	cytosol	33.91	34.4
TraesCS6D01G366000.1	Wheat	cytosol	35.63	32.21

Protein Annotations

MapMan:21.8.1.5	Gene3D:3.40.50.720	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0050662	GO:GO:0080110	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR10366	PANTHER:PTHR10366:SF493	SUPFAM:SSF51735	InterPro:TKPR1	EnsemblPlantsGene:TraesCS5D01G278800	EnsemblPlants:TraesCS5D01G278800.1
TIGR:cd08958	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:381025911..381027809

Molecular Weight (calculated)

38705.9 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.074

Length

348 amino acids

Sequence
(BLAST)

001: MRSWICIKSQ LHHFQFERMV SSTKGKVCVT GASGFLASWL IKRLLECGYH VIGTVRDPGN RKKVGHLWKL PGANERLQLV RADLLEEGSF DDAVMACEGV
101: FHIASPVLGK SDSNCKEATL GPAINGTLNV LRSCKKSPFL KRVVLTSSSS AVRIRDETQQ PELLWDETTW SCVPLCEKLQ LWYALAKVFA EKAALDFAKE
201: NNIDLVTVLP SFVIGPSLSH ELCTTASDIL GLLQGDTDRF TSYGRMGYVH IDDVARSHIL VYETPEARGR YLCSSVVLDN NELVGLLTKQ FPVFPIPRRL
301: SNPYGKQAYQ LNTSKLQGLG LKFKGVQEMF NDCVESLKAQ GHLLECPL

Best Arabidopsis Sequence Match ( AT1G68540.1 )
(BLAST)

001: MSEYLVTGGT GFIASYIIKS LLELGHTVRT TVRNPRDEEK VGFLWEFQGA KQRLKILQAD LTVEGSFDEA VNGVDGVFHT ASPVLVPQDH NIQETLVDPI
101: IKGTTNVMSS CAKSKATLKR IVLTSSCSSI RYRFDATEAS PLNESHWSDP EYCKRFNLWY GYAKTLGERE AWRIAEEKGL DLVVVNPSFV VGPLLGPKPT
201: STLLMILAIA KGLAGEYPNF TVGFVHIDDV VAAHVLAMEE PKASGRIICS SSVAHWSEII ELMRNKYPNY PFENKCSNKE GDNSPHSMDT RKIHELGFGS
301: FKSLPEMFDD CIISFQKKGL L

Arabidopsis Description

TKPR2TKPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W2A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.