Factsheet for PGSC0003DMT400046912

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

plastid 4
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102730.2.1	Tomato	cytosol, peroxisome, plastid	83.73	53.68
VIT_12s0035g02070.t01	Wine grape	cytosol	71.29	44.74
CDY09372	Canola	cytosol	63.64	41.43
AT2G02400.1	Thale cress	cytosol	62.68	41.2
Bra026600.1-P	Field mustard	cytosol	62.2	40.5
CDY15830	Canola	cytosol	61.24	39.88
GSMUA_Achr8P29060_001	Banana	cytosol	62.2	38.81
KRH11704	Soybean	cytosol	57.42	36.36
Os01t0978400-01	Rice	cytosol	53.59	34.25
PGSC0003DMT400065273	Potato	cytosol	45.45	29.32
PGSC0003DMT400073398	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	39.71	25.0
PGSC0003DMT400051049	Potato	endoplasmic reticulum, peroxisome, plastid	38.76	24.4
PGSC0003DMT400065107	Potato	cytosol	32.54	20.3
PGSC0003DMT400013318	Potato	cytosol, extracellular, plastid	28.23	18.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400046912	EnsemblPlantsGene:PGSC0003DMG403018219	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0050662	InterPro:Epimerase_deHydtase
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF295	PFAM:PF01370	PGSC:PGSC0003DMG403018219	SUPFAM:SSF51735
UniParc:UPI00029551E8	UniProt:M1BJU3	MapMan:35.1	:	:	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG403018219]

Coordinates

chr1:-:79398920..79402995

Molecular Weight (calculated)

23001.9 Da

IEP (calculated)

8.608

GRAVY (calculated)

0.091

Length

209 amino acids

Sequence
(BLAST)

001: MDRSPTSIPS ELSLLHKAFV VRFTSSVWFV GYVLRVHKML ILRPAKWYPV SKTLAEKAAW EFAEKNGLDV VAINPATCLG QLLQPGLNAS CAVLQQLLQG
101: STDTQEYHWL GAVHVKDVAA AQILLFESPR ASGRYLCTNG IYQFGDFADR VSKLSPEFSV YRFTGETQPG LVACKDAAKK LIDLGLIFTP VEDAIKDTVN
201: SLKAKGLLN

Best Arabidopsis Sequence Match ( AT2G02400.1 )
(BLAST)

001: MAKETVCVTG ANGFIGSWII RTLIEKGYTK IHASIYPGSD PTHLLQLPGS DSKIKIFEAD LLDSDAISRA IDGCAGVFHV ASPCTLDPPV DPEKELVEPA
101: VKGTINVLEA AKRFNVRRVV ITSSISALVP NPNWPEKVPV DESSWSDLDF CKSRQKWYPI SKTLAEKAAW EFSEKHGTNI VTIHPSTCLG PLLQPNLNAS
201: CAVLLQLLQG STETQEHHWL GVVHVKDVAK GHVMLFETPD ASGRFLCTNG IYQFSEFAAL VSKLFPEFAV HKFDKETQPG LTSCNDAAKR LIELGLVFTA
301: VEDAVKETVQ SLRDKGFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVQ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.