CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98694	Soybean	endoplasmic reticulum	94.46	94.46
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	76.92	77.64
Solyc01g008550.2.1	Tomato	extracellular, nucleus	74.77	75.94
VIT_06s0004g02370.t01	Wine grape	endoplasmic reticulum, golgi	73.85	74.53
Solyc01g008530.2.1	Tomato	endoplasmic reticulum	74.77	74.09
AT1G51410.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	72.92	72.92
CDY43911	Canola	cytosol	72.62	72.62
Bra014263.1-P	Field mustard	cytosol	72.31	72.31
CDY65726	Canola	cytosol	72.31	72.31
CDY03618	Canola	cytosol	72.31	72.31
Bra023231.1-P	Field mustard	cytosol	72.0	72.0
Bra030440.1-P	Field mustard	cytosol	72.0	72.0
KRH24064	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.62	71.95
CDY22576	Canola	cytosol	71.08	71.08
KRH24066	Soybean	mitochondrion	73.85	70.8
KRH24068	Soybean	endoplasmic reticulum	70.46	70.46
Solyc01g008540.2.1	Tomato	endoplasmic reticulum	67.38	67.8
KRH72740	Soybean	cytosol	44.62	45.31
KRH09656	Soybean	cytosol	45.85	44.35
KRH47350	Soybean	cytosol	45.23	44.28
KRH44552	Soybean	cytosol	44.92	43.84
KRH23636	Soybean	cytosol	45.23	43.49
KRH30171	Soybean	nucleus	40.92	41.43
KRG98212	Soybean	endoplasmic reticulum	40.31	40.81
KRH49476	Soybean	cytosol	39.69	40.44
KRH75363	Soybean	cytosol	39.38	40.13
KRH09917	Soybean	mitochondrion	40.92	40.06
KRH23414	Soybean	mitochondrion	40.62	39.88
KRH17091	Soybean	cytosol, golgi, plastid	43.69	39.44
KRH11704	Soybean	cytosol	37.23	36.67

Protein Annotations

EMBL:ACUP02010912	EnsemblPlants:KRG98697	EnsemblPlantsGene:GLYMA_18G091500	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF407
PFAM:PF01370	ProteinID:KRG98697	ProteinID:KRG98697.1	SUPFAM:SSF51735	UniParc:UPI000189D900	UniProt:A0A0R0EY92
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:9143974..9150438

Molecular Weight (calculated)

35787.9 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.075

Length

325 amino acids

Sequence
(BLAST)

001: MSSGAGKVVC VTGASGYIAS WIVKFLLNRG YTVKATVRDT SDPKKINHLV GLDGAKERLH LYKANLLEEG SFNSVVQGCH AVFHTASPFY HNVKDPQAEL
101: LDPALKGTLN VLKSCVNLPT LERVVLTSSV AAVAYNGKPR TPDVVVDETW FSDPGFCRES QMWYTLSKTL AEDAAWKFVK ENNIDMVTIN PAMVIGPLLQ
201: PVLNTSAASI LNVINGAQTF PNASFGWVNV KDVANAHILA YENASANGRY CLVERVAHYS EIVKILRDLY PTLQLPEKCA DDNPYVPIYQ VSKEKAKSLG
301: IEYTPLEVSL KETVDSLKEK KFTNF

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.