CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24064	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.54	72.87
VIT_06s0004g02380.t01	Wine grape	endoplasmic reticulum, golgi, plastid	71.38	72.05
KRH24066	Soybean	mitochondrion	74.77	71.68
KRG98697	Soybean	nucleus	70.46	70.46
VIT_06s0004g02370.t01	Wine grape	endoplasmic reticulum, golgi	68.62	69.25
KRG98694	Soybean	endoplasmic reticulum	68.92	68.92
Solyc01g008550.2.1	Tomato	extracellular, nucleus	65.85	66.88
Bra014263.1-P	Field mustard	cytosol	64.92	64.92
CDY65726	Canola	cytosol	64.92	64.92
AT1G51410.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	64.92	64.92
CDY03618	Canola	cytosol	64.92	64.92
CDY43911	Canola	cytosol	64.62	64.62
Solyc01g008530.2.1	Tomato	endoplasmic reticulum	64.92	64.33
Bra023231.1-P	Field mustard	cytosol	64.31	64.31
Bra030440.1-P	Field mustard	cytosol	64.31	64.31
CDY22576	Canola	cytosol	64.0	64.0
Solyc01g008540.2.1	Tomato	endoplasmic reticulum	60.92	61.3
KRH47350	Soybean	cytosol	44.62	43.67
KRH44552	Soybean	cytosol	44.31	43.24
KRH09656	Soybean	cytosol	44.31	42.86
KRH72740	Soybean	cytosol	41.54	42.19
KRH23636	Soybean	cytosol	43.38	41.72
KRH75363	Soybean	cytosol	40.92	41.69
KRH09917	Soybean	mitochondrion	41.54	40.66
KRH23414	Soybean	mitochondrion	41.23	40.48
KRH49476	Soybean	cytosol	39.69	40.44
KRH30171	Soybean	nucleus	39.08	39.56
KRG98212	Soybean	endoplasmic reticulum	39.08	39.56
KRH11704	Soybean	cytosol	38.46	37.88
KRH17091	Soybean	cytosol, golgi, plastid	40.92	36.94

Protein Annotations

EMBL:ACUP02007168	EMBL:ACUP02007169	EnsemblPlants:KRH24068	EnsemblPlantsGene:GLYMA_12G019900	Gene3D:3.40.50.720	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366
PANTHER:PTHR10366:SF407	PFAM:PF01370	ProteinID:KRH24068	ProteinID:KRH24068.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI00018C6CF3	UniProt:A0A0R0HDJ8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1394296..1400466

Molecular Weight (calculated)

36125.1 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.129

Length

325 amino acids

Sequence
(BLAST)

001: MSSNSGKVVC VTGASGFIAS WIIKLLLQRG YTVRATVRDP SKPEKVDHLL KLDGAKERLH LFKADLLEEG SFDSAFEGCD GVFHTASPVH FIVTDPQNQL
101: IDPAIKGTLN VVKSCAKSPS VKQVILTSSV AAVLYNGRPR TPEVVVDETW FSDPDFLREN ERWYAFAKTS AEDAARKFLS EYDIKLVVIN PSMSIGPLLQ
201: PELNASSSSI LNLINGSPTF SNNSFGWINV KDVANAHIQA YEIDSASGRY CLVERVIHFS ELAKILRDMY PTLQIPDKCE DDEPFMPTFQ VSKEKAKSLG
301: VEFIPLEVSL RETVESLKEK KFVDF

Best Arabidopsis Sequence Match ( AT5G19440.1 )
(BLAST)

001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF

Arabidopsis Description

At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.