CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98212	Soybean	endoplasmic reticulum	95.64	95.64
KRH72740	Soybean	cytosol	67.91	68.12
GSMUA_Achr4P18740_001	Banana	cytosol, extracellular, plastid	63.24	63.64
KRH17091	Soybean	cytosol, golgi, plastid	66.98	59.72
Os03t0818200-01	Rice	cytosol	59.19	56.89
KXG37270	Sorghum	cytosol	57.32	56.1
TraesCS5D01G486300.2	Wheat	cytosol	57.63	56.06
TraesCS5B01G486500.1	Wheat	cytosol	57.63	56.06
Zm00001d012980_P001	Maize	cytosol	56.7	54.98
TraesCS5A01G473600.1	Wheat	cytosol	56.39	54.85
EER93204	Sorghum	cytosol	55.45	53.94
HORVU5Hr1G112340.7	Barley	cytosol, plastid	57.01	48.8
Zm00001d012982_P001	Maize	cytosol	56.07	48.26
KRH11704	Soybean	cytosol	47.35	46.06
KRH47350	Soybean	cytosol	45.17	43.67
KRH44552	Soybean	cytosol	44.24	42.64
KRH09656	Soybean	cytosol	44.24	42.26
KRG98694	Soybean	endoplasmic reticulum	41.74	41.23
KRH23636	Soybean	cytosol	43.3	41.12
KRG98697	Soybean	nucleus	41.43	40.92
KRH24064	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.81	39.94
KRH24066	Soybean	mitochondrion	41.43	39.23
KRH24068	Soybean	endoplasmic reticulum	39.56	39.08
KRH09917	Soybean	mitochondrion	37.38	36.14
KRH23414	Soybean	mitochondrion	37.07	35.95
KRH75363	Soybean	cytosol	35.51	35.74
KRH49476	Soybean	cytosol	34.27	34.48
Zm00001d012981_P002	Maize	cytosol	44.86	32.51

Protein Annotations

EMBL:ACUP02006882	EnsemblPlants:KRH30171	EnsemblPlantsGene:GLYMA_11G164700	EntrezGene:100806281	Gene3D:3.40.50.720	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366
PANTHER:PTHR10366:SF369	PFAM:PF01370	ProteinID:KRH30171	ProteinID:KRH30171.1	SUPFAM:SSF51735	UniParc:UPI000189D903
UniProt:A0A0R4J4L1	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:15648454..15653309

Molecular Weight (calculated)

34961.3 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.033

Length

321 amino acids

Sequence
(BLAST)

001: MSKVVCVTGA SGAIGSWVVL LLLQRGYTVH ATVQDIKDEN ETKHLEEMEG AKSHLHFFEM DLLDIDSIAA AIKGCSGVIH LACPNIIGQV EDPEKQILEP
101: AIKGTVNVLK AAKEAGVERV VATSSISSIM PSPNWPADKI KGEECWTDLE YCKQKGLYYP IAKTLAEKAG WDFAKETGFD VVMINPGTAL GPLLPPRINS
201: SMAVLVSVLK GGKETYEDFF MGTAHFKDIA LAHILALENK KAAGRHLCVE SIRHFSDLVD KVAELYPEYD VAKLPKDTQP GLLRASGKDA SKKLIDLGLE
301: FTPVEQIIKD AVESLKSRGY V

Best Arabidopsis Sequence Match ( AT5G58490.1 )
(BLAST)

001: MLTDEREVVC VTGASGCIGS WLVHQLLLRG YSVHATVKNL QDEKETKHLE GLEGAATRLH LFEMDLLQYD TVSAAINGCS GVFHLASPCI VDEVQDPQKQ
101: LLDPAVKGTI NVLTAAKEAS VKRVVVTSSI SAITPSPNWP ADKIKNEECW AAEDYCRQNG LWYPLSKTLA EKAAWEFAEE KGLDVVVVNP GTVMGPVIPP
201: SLNASMHMLL RLLQGCTETY ENFFMGSVHF KDVALAHILV YEDPYSKGRH LCVEAISHYG DFVAKVAELY PNYNVPKLPR ETQPGLLRDK NASKKLIDLG
301: LKFISMEEII KEGVESLKSK GFIS

Arabidopsis Description

Cinnamoyl-CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FGH3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.