Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14000 | Canola | cytosol | 89.57 | 89.57 |
| Bra002236.1-P | Field mustard | cytosol | 89.88 | 88.79 |
| CDX92530 | Canola | cytosol | 89.57 | 88.48 |
| AT1G51410.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 74.85 | 75.08 |
| AT1G09510.1 | Thale cress | cytosol, plastid, vacuole | 57.36 | 58.07 |
| AT1G66800.1 | Thale cress | peroxisome, plasma membrane, plastid | 56.75 | 57.99 |
| AT1G09490.1 | Thale cress | golgi | 54.91 | 55.59 |
| AT1G09500.1 | Thale cress | endoplasmic reticulum | 54.91 | 55.08 |
| AT1G09480.1 | Thale cress | cytosol | 54.91 | 48.51 |
| AT1G80820.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 48.77 | 47.89 |
| AT5G58490.1 | Thale cress | cytosol | 47.55 | 47.84 |
| AT1G15950.1 | Thale cress | cytosol | 50.31 | 47.67 |
| AT4G35420.1 | Thale cress | extracellular | 46.32 | 46.32 |
| AT2G02400.1 | Thale cress | cytosol | 40.49 | 41.51 |
| AT1G68540.1 | Thale cress | cytosol | 39.88 | 40.5 |
| AT1G25460.1 | Thale cress | cytosol, plastid | 37.12 | 37.93 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:832064 | UniProt:A0A178UT60 | ProteinID:AED92707.1 | ArrayExpress:AT5G19440 |
| EnsemblPlantsGene:AT5G19440 | RefSeq:AT5G19440 | TAIR:AT5G19440 | RefSeq:AT5G19440-TAIR-G | EnsemblPlants:AT5G19440.1 | TAIR:AT5G19440.1 |
| Unigene:At.22934 | EMBL:BT024722 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004022 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0016020 |
| GO:GO:0050662 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_197445.1 | ProteinID:OAO96344.1 | PFAM:PF01370 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF407 | UniProt:Q29Q34 |
| SUPFAM:SSF51735 | UniParc:UPI0000162508 | : | : | : | : |
Description
At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34]
Coordinates
chr5:+:6556348..6558373
Molecular Weight (calculated)
35595.7 Da
IEP (calculated)
7.150
GRAVY (calculated)
-0.088
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSGEGKVV CVTGASGYIA SWLVKFLLSR GYTVKASVRD PSDPKKTQHL VSLEGAKERL HLFKADLLEQ GSFDSAIDGC HGVFHTASPF FNDAKDPQAE
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
101: LIDPAVKGTL NVLNSCAKAS SVKRVVVTSS MAAVGYNGKP RTPDVTVDET WFSDPELCEA SKMWYVLSKT LAEDAAWKLA KEKGLDIVTI NPAMVIGPLL
201: QPTLNTSAAA ILNLINGAKT FPNLSFGWVN VKDVANAHIQ AFEVPSANGR YCLVERVVHH SEIVNILREL YPNLPLPERC VDENPYVPTY QVSKDKTRSL
301: GIDYIPLKVS IKETVESLKE KGFAQF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.