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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g046160.1.1 Tomato cytosol 63.54 95.31
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 71.88 46.0
Solyc04g007830.2.1 Tomato cytosol 63.54 45.52
Solyc05g046150.2.1 Tomato cytosol, extracellular 62.5 40.0
Solyc09g014540.1.1 Tomato cytosol 31.25 29.7
VIT_01s0011g05150.t01 Wine grape cytosol 38.54 26.81
CDY12485 Canola cytosol 27.08 26.26
Solyc09g005410.1.1 Tomato cytosol 36.46 25.74
Solyc09g014530.2.1 Tomato cytosol, extracellular 39.58 25.33
Solyc09g005400.2.1 Tomato cytosol 39.58 25.33
PGSC0003DMT400075928 Potato cytosol 78.12 25.25
Solyc09g005500.2.1 Tomato extracellular 38.54 24.5
Solyc09g014580.2.1 Tomato cytosol 38.54 24.34
Solyc09g005420.2.1 Tomato cytosol 37.5 24.0
VIT_01s0011g05190.t01 Wine grape cytosol 37.5 23.84
Solyc09g014550.2.1 Tomato cytosol 37.5 23.68
Bra007946.1-P Field mustard cytosol 33.33 23.36
KRH13947 Soybean cytosol 37.5 23.23
Bra016181.1-P Field mustard cytosol 33.33 23.19
CDX96283 Canola cytosol 33.33 23.19
AT5G28000.1 Thale cress cytosol 39.58 23.17
CDY09499 Canola cytosol 32.29 22.63
VIT_01s0011g05180.t01 Wine grape cytosol 35.42 22.52
Bra016180.1-P Field mustard cytosol 32.29 22.46
CDX72752 Canola cytosol 32.29 22.46
CDY41465 Canola cytosol 36.46 22.29
Bra016364.1-P Field mustard cytosol 36.46 22.29
AT5G28010.2 Thale cress cytosol 38.54 22.29
CDX91696 Canola cytosol 35.42 21.66
Bra012362.1-P Field mustard cytosol 35.42 21.25
CDY09495 Canola cytosol 34.38 20.89
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 34.38 20.75
CDY70076 Canola cytosol 31.25 20.69
KRH37979 Soybean cytosol 33.33 20.65
CDY12484 Canola cytosol 34.38 20.62
AT1G70840.1 Thale cress cytosol 36.46 20.47
Bra016179.1-P Field mustard cytosol 31.25 20.41
Bra003939.1-P Field mustard cytosol 34.38 20.25
CDX68328 Canola cytosol 34.38 20.12
KRH13946 Soybean cytosol 32.29 20.0
CDY00801 Canola cytosol 36.46 19.77
CDY23474 Canola cytosol 33.33 19.63
Bra007947.1-P Field mustard cytosol 32.29 19.62
Bra016178.1-P Field mustard cytosol 32.29 19.62
CDY03715 Canola cytosol 33.33 19.51
CDY65619 Canola cytosol 33.33 19.51
CDY25772 Canola cytosol 32.29 19.5
Bra012364.1-P Field mustard cytosol 32.29 19.5
Bra012361.1-P Field mustard cytosol 28.12 19.42
CDY68859 Canola cytosol 29.17 19.31
AT1G70890.1 Thale cress cytosol 31.25 18.99
CDX72753 Canola cytosol 31.25 18.99
AT1G70880.1 Thale cress cytosol 31.25 18.87
AT1G35260.1 Thale cress cytosol 29.17 18.42
CDY21418 Canola cytosol 33.33 17.58
Bra024564.1-P Field mustard cytosol 33.33 17.58
CDY12480 Canola cytosol 29.17 17.39
KRH13944 Soybean cytosol 25.0 17.14
CDY41463 Canola cytosol 28.12 16.77
Bra016362.1-P Field mustard cytosol 28.12 16.77
Bra016182.1-P Field mustard cytosol 35.42 16.35
CDX89696 Canola cytosol 25.0 15.89
CDY03713 Canola cytosol 25.0 15.58
CDY17433 Canola cytosol 23.96 15.23
CDY12482 Canola cytosol 19.79 15.2
Solyc01g081130.2.1 Tomato cytosol 11.46 14.47
AT1G23130.1 Thale cress cytosol 23.96 14.38
CDY09492 Canola cytosol 33.33 13.97
CDY03718 Canola cytosol 33.33 13.97
Bra007945.1-P Field mustard cytosol 33.33 13.97
AT1G35310.1 Thale cress cytosol 21.88 13.91
CDY25771 Canola cytosol 21.88 13.21
Bra012363.1-P Field mustard cytosol 21.88 13.04
Bra007949.1-P Field mustard cytosol 33.33 12.7
CDY16542 Canola cytosol 17.71 12.59
CDX92456 Canola cytosol 16.67 11.85
AT1G70850.1 Thale cress cytosol 37.5 11.39
Bra002309.1-P Field mustard cytosol 14.58 10.37
AT1G70830.1 Thale cress cytosol 31.25 8.96
Solyc09g014560.1.1 Tomato cytosol 3.12 4.05
AT1G70860.2 Thale cress cytosol 2.08 2.67
CDX96282 Canola cytosol 2.08 1.64
CDY11541 Canola cytosol 2.08 1.29
VIT_01s0011g05170.t01 Wine grape cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc05g046220.1.1EnsemblPlantsGene:Solyc05g046220.1Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfncoils:CoilPANTHER:PTHR31907
PANTHER:PTHR31907:SF4PFAM:PF00407SMART:SM01037SUPFAM:SSF55961UniParc:UPI0002766ABFUniProt:K4C0V5
MapMan:35.1:::::
Description
No Description!
Coordinates
chr5:-:58415437..58415727
Molecular Weight (calculated)
11409.8 Da
IEP (calculated)
4.797
GRAVY (calculated)
-0.431
Length
96 amino acids
Sequence
(BLAST)
1: MKCLIFFPDV IENAAKEIVE EIDEENKLIK KKMIEGDLLE DYKSFYITTH VETKGENNLF IWIIEYEKKN ANVSDPHTFM EFALKMTKDI ETHHIK
Best Arabidopsis Sequence Match ( AT5G28000.1 )
(BLAST)
001: MAETTKEMPK SSLWGEVEVE VDIKSPAEKF YQVYVGRPDH VAKATSSKVQ ACDLLEGEWG TISSIVNWNY VYAGKAKVAK ERIELVEPEK KLIKFRVIEG
101: DVLAVYKNFF ITISVTPKEG GVGSVAKWHL EYEKNDVNVP DPENFLPFLA EMTKEIDEHL LSEE
Arabidopsis Description
Major latex-like protein [Source:UniProtKB/TrEMBL;Acc:Q941R5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.