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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g014530.2.1 Tomato cytosol, extracellular 87.5 88.67
Solyc09g014580.2.1 Tomato cytosol 83.55 83.55
Solyc09g005410.1.1 Tomato cytosol 72.37 80.88
Solyc09g005420.2.1 Tomato cytosol 79.61 80.67
Solyc09g005400.2.1 Tomato cytosol 78.29 79.33
Solyc09g014560.1.1 Tomato cytosol 36.84 75.68
Solyc01g081130.2.1 Tomato cytosol 36.18 72.37
Solyc09g014540.1.1 Tomato cytosol 42.76 64.36
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 64.47 61.64
Solyc09g005500.2.1 Tomato extracellular 45.39 45.7
Solyc05g046160.1.1 Tomato cytosol 18.42 43.75
VIT_01s0011g05170.t01 Wine grape cytosol 18.42 43.75
VIT_01s0011g05190.t01 Wine grape cytosol 42.11 42.38
VIT_01s0011g05150.t01 Wine grape cytosol 36.18 39.86
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 38.82 39.33
VIT_01s0011g05180.t01 Wine grape cytosol 38.82 39.07
Solyc04g007830.2.1 Tomato cytosol 34.21 38.81
AT1G70890.1 Thale cress cytosol 39.47 37.97
Solyc05g046220.1.1 Tomato cytosol 23.68 37.5
CDY09495 Canola cytosol 38.16 36.71
Solyc05g046150.2.1 Tomato cytosol, extracellular 36.18 36.67
AT1G70860.2 Thale cress cytosol 17.76 36.0
AT1G70840.1 Thale cress cytosol 38.82 34.5
KRH13947 Soybean cytosol 34.87 34.19
CDY65619 Canola cytosol 36.84 34.15
AT5G28010.2 Thale cress cytosol 36.84 33.73
Bra007947.1-P Field mustard cytosol 34.87 33.54
CDY03715 Canola cytosol 36.18 33.54
KRH37979 Soybean cytosol 33.55 32.9
Bra007946.1-P Field mustard cytosol 29.61 32.85
CDY09499 Canola cytosol 29.61 32.85
Bra003939.1-P Field mustard cytosol 34.87 32.52
CDY03713 Canola cytosol 32.89 32.47
CDX89696 Canola cytosol 32.24 32.45
AT1G35260.1 Thale cress cytosol 32.24 32.24
AT1G70880.1 Thale cress cytosol 33.55 32.08
CDY41465 Canola cytosol 32.89 31.85
Bra016364.1-P Field mustard cytosol 32.89 31.85
CDX68328 Canola cytosol 34.21 31.71
CDY23474 Canola cytosol 33.55 31.29
Bra012362.1-P Field mustard cytosol 32.89 31.25
CDY12484 Canola cytosol 32.89 31.25
CDX91696 Canola cytosol 32.24 31.21
CDY00801 Canola cytosol 35.53 30.51
AT1G35310.1 Thale cress cytosol 30.26 30.46
Bra016180.1-P Field mustard cytosol 27.63 30.43
Bra016178.1-P Field mustard cytosol 31.58 30.38
CDY16542 Canola cytosol 26.97 30.37
CDY12485 Canola cytosol 19.74 30.3
Bra012364.1-P Field mustard cytosol 31.58 30.19
CDY25772 Canola cytosol 31.58 30.19
AT1G23130.1 Thale cress cytosol 31.58 30.0
AT5G28000.1 Thale cress cytosol 32.24 29.88
CDY17433 Canola cytosol 29.61 29.8
CDX72753 Canola cytosol 30.92 29.75
CDX96283 Canola cytosol 26.97 29.71
Bra016181.1-P Field mustard cytosol 26.97 29.71
CDX72752 Canola cytosol 26.97 29.71
KRH13946 Soybean cytosol 30.26 29.68
Bra024564.1-P Field mustard cytosol 35.53 29.67
CDY21418 Canola cytosol 35.53 29.67
Bra016182.1-P Field mustard cytosol 40.13 29.33
Bra016179.1-P Field mustard cytosol 28.29 29.25
CDY12480 Canola cytosol 30.92 29.19
CDX92456 Canola cytosol 25.66 28.89
CDY41463 Canola cytosol 29.61 27.95
Bra016362.1-P Field mustard cytosol 29.61 27.95
KRH13944 Soybean cytosol 25.66 27.86
Bra002309.1-P Field mustard cytosol 24.34 27.41
Bra012361.1-P Field mustard cytosol 25.0 27.34
Bra007945.1-P Field mustard cytosol 38.82 25.76
CDY09492 Canola cytosol 38.82 25.76
CDY03718 Canola cytosol 38.82 25.76
CDY12482 Canola cytosol 21.05 25.6
CDX96282 Canola cytosol 19.74 24.59
CDY70076 Canola cytosol 22.37 23.45
CDY25771 Canola cytosol 24.34 23.27
Bra012363.1-P Field mustard cytosol 24.34 22.98
CDY68859 Canola cytosol 21.05 22.07
Bra007949.1-P Field mustard cytosol 34.21 20.63
CDY11541 Canola cytosol 19.74 19.35
AT1G70850.1 Thale cress cytosol 39.47 18.99
AT1G70830.1 Thale cress cytosol 36.84 16.72
Protein Annotations
EnsemblPlants:Solyc09g014550.2.1EnsemblPlantsGene:Solyc09g014550.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B91BUniProt:K4CRT2MapMan:35.1
Description
No Description!
Coordinates
chr9:-:6176738..6177747
Molecular Weight (calculated)
17415.1 Da
IEP (calculated)
5.560
GRAVY (calculated)
-0.266
Length
152 amino acids
Sequence
(BLAST)
001: MGLKSVLCAK IEMKANKDVF HDVFTNKPHH VSTMCPLHIQ GCELLEGVFG TVGSKICWTY ILEGEKKISK QVVETVDHET KVLTFKEFEG DLVNKYDNFK
101: ATLRIETKDE IDLVSWTMEY ERPNENVPEL VNLLDFVVGM TKGIDDHHVK MN
Best Arabidopsis Sequence Match ( AT5G28010.2 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.