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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 84.33 75.33
Solyc05g046160.1.1 Tomato cytosol 35.82 75.0
Solyc05g046150.2.1 Tomato cytosol, extracellular 71.64 64.0
Solyc05g046220.1.1 Tomato cytosol 45.52 63.54
VIT_01s0011g05170.t01 Wine grape cytosol 19.4 40.62
VIT_01s0011g05190.t01 Wine grape cytosol 44.03 39.07
Solyc09g005410.1.1 Tomato cytosol 39.55 38.97
Bra007946.1-P Field mustard cytosol 39.55 38.69
Solyc09g005420.2.1 Tomato cytosol 43.28 38.67
Solyc09g005500.2.1 Tomato extracellular 43.28 38.41
Solyc09g005400.2.1 Tomato cytosol 41.79 37.33
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 44.03 37.11
VIT_01s0011g05180.t01 Wine grape cytosol 41.79 37.09
VIT_01s0011g05150.t01 Wine grape cytosol 38.06 36.96
Solyc09g014580.2.1 Tomato cytosol 41.79 36.84
KRH13947 Soybean cytosol 41.79 36.13
AT5G28000.1 Thale cress cytosol 44.03 35.98
CDY09499 Canola cytosol 35.82 35.04
CDX91696 Canola cytosol 41.04 35.03
AT5G28010.2 Thale cress cytosol 43.28 34.94
Solyc09g014530.2.1 Tomato cytosol, extracellular 38.81 34.67
CDY41465 Canola cytosol 40.3 34.39
Bra016364.1-P Field mustard cytosol 40.3 34.39
Solyc09g014550.2.1 Tomato cytosol 38.81 34.21
Bra016179.1-P Field mustard cytosol 37.31 34.01
CDY03715 Canola cytosol 41.04 33.54
CDY65619 Canola cytosol 41.04 33.54
CDY12485 Canola cytosol 24.63 33.33
Bra012362.1-P Field mustard cytosol 39.55 33.12
CDX68328 Canola cytosol 40.3 32.93
CDY09495 Canola cytosol 38.81 32.91
KRH37979 Soybean cytosol 38.06 32.9
CDY23474 Canola cytosol 39.55 32.52
CDY12484 Canola cytosol 38.81 32.5
Bra007947.1-P Field mustard cytosol 38.06 32.28
AT1G70840.1 Thale cress cytosol 41.04 32.16
Bra003939.1-P Field mustard cytosol 38.81 31.9
CDX96283 Canola cytosol 32.84 31.88
Bra016181.1-P Field mustard cytosol 32.84 31.88
Bra016180.1-P Field mustard cytosol 32.84 31.88
AT1G70890.1 Thale cress cytosol 37.31 31.65
CDX72752 Canola cytosol 32.09 31.16
CDY70076 Canola cytosol 33.58 31.03
KRH13946 Soybean cytosol 35.07 30.32
Bra016362.1-P Field mustard cytosol 35.82 29.81
CDY41463 Canola cytosol 35.82 29.81
CDY12480 Canola cytosol 35.82 29.81
Bra012364.1-P Field mustard cytosol 35.07 29.56
CDY25772 Canola cytosol 35.07 29.56
Bra012361.1-P Field mustard cytosol 30.6 29.5
CDY00801 Canola cytosol 38.81 29.38
CDY03713 Canola cytosol 33.58 29.22
Bra016178.1-P Field mustard cytosol 34.33 29.11
CDX72753 Canola cytosol 34.33 29.11
Solyc01g081130.2.1 Tomato cytosol 16.42 28.95
AT1G70880.1 Thale cress cytosol 34.33 28.93
Solyc09g014560.1.1 Tomato cytosol 15.67 28.38
CDY68859 Canola cytosol 30.6 28.28
AT1G23130.1 Thale cress cytosol 33.58 28.12
CDY12482 Canola cytosol 25.37 27.2
Solyc09g014540.1.1 Tomato cytosol 20.15 26.73
Bra024564.1-P Field mustard cytosol 35.82 26.37
CDY21418 Canola cytosol 35.82 26.37
AT1G35260.1 Thale cress cytosol 29.85 26.32
Bra016182.1-P Field mustard cytosol 40.3 25.96
KRH13944 Soybean cytosol 26.87 25.71
AT1G70860.2 Thale cress cytosol 14.18 25.33
CDY17433 Canola cytosol 28.36 25.17
CDX89696 Canola cytosol 28.36 25.17
CDY25771 Canola cytosol 29.1 24.53
Bra012363.1-P Field mustard cytosol 29.1 24.22
AT1G35310.1 Thale cress cytosol 26.87 23.84
CDY03718 Canola cytosol 40.3 23.58
CDY09492 Canola cytosol 40.3 23.58
Bra007945.1-P Field mustard cytosol 40.3 23.58
Bra007949.1-P Field mustard cytosol 38.81 20.63
CDX92456 Canola cytosol 17.91 17.78
Bra002309.1-P Field mustard cytosol 17.91 17.78
CDY16542 Canola cytosol 17.91 17.78
AT1G70850.1 Thale cress cytosol 38.81 16.46
CDX96282 Canola cytosol 14.93 16.39
AT1G70830.1 Thale cress cytosol 38.81 15.52
CDY11541 Canola cytosol 17.16 14.84
Protein Annotations
EnsemblPlants:Solyc04g007830.2.1EnsemblPlantsGene:Solyc04g007830.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI0002766BB3UniProt:K4BNU0
MapMan:35.1:::::
Description
No Description!
Coordinates
chr4:+:1505284..1506417
Molecular Weight (calculated)
15762.9 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.653
Length
134 amino acids
Sequence
(BLAST)
001: MSLQGKLVSE INIKCDGDVF YEVYRQRPHH ISTMSPNKVQ NVDVHEDGKE VVGKERVEEI DEEKKMMKKR IIEGDILEYY KSFYVTIHVE TKGENNLVTW
101: ILEYEKKNVN VPDPHTLVEL LLNVTKDIEN HHIK
Best Arabidopsis Sequence Match ( AT5G28000.1 )
(BLAST)
001: MAETTKEMPK SSLWGEVEVE VDIKSPAEKF YQVYVGRPDH VAKATSSKVQ ACDLLEGEWG TISSIVNWNY VYAGKAKVAK ERIELVEPEK KLIKFRVIEG
101: DVLAVYKNFF ITISVTPKEG GVGSVAKWHL EYEKNDVNVP DPENFLPFLA EMTKEIDEHL LSEE
Arabidopsis Description
Major latex-like protein [Source:UniProtKB/TrEMBL;Acc:Q941R5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.