Factsheet for Solyc06g062950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

extracellular: 22364583
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012537	Potato	extracellular	95.49	95.49
VIT_09s0002g01040.t01	Wine grape	extracellular	72.16	72.63
CDX97539	Canola	plastid	42.65	68.81
KRH47618	Soybean	extracellular	67.27	67.35
VIT_09s0002g01030.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	67.91	66.88
CDY52259	Canola	extracellular, plasma membrane, vacuole	63.4	66.85
Bra027376.1-P	Field mustard	extracellular, plasma membrane, vacuole	66.75	66.75
CDY33251	Canola	plasma membrane	66.62	66.71
Bra021529.1-P	Field mustard	plasma membrane	66.11	66.19
CDY39093	Canola	plasma membrane	66.11	66.19
AT3G14067.1	Thale cress	plasma membrane	65.98	65.89
GSMUA_Achr6P03640_001	Banana	plastid	52.19	64.39
Os02t0779200-01	Rice	extracellular	62.37	61.89
TraesCS6B01G370300.1	Wheat	golgi	62.11	61.79
EES07632	Sorghum	extracellular	62.63	61.75
TraesCS6A01G339400.1	Wheat	extracellular, golgi	62.11	61.56
Zm00001d018282_P001	Maize	extracellular	61.98	61.43
TraesCS6D01G319700.1	Wheat	golgi	61.86	60.91
HORVU5Hr1G027960.1	Barley	plastid	33.38	57.81
HORVU6Hr1G081850.2	Barley	cytosol, plastid	57.35	56.26
TraesCS6D01G318700.1	Wheat	cytosol	48.07	56.01
Solyc02g092670.1.1	Tomato	extracellular	52.96	54.51
Solyc02g092680.1.1	Tomato	extracellular	51.8	53.39
EES07654	Sorghum	plastid	42.91	53.19
Zm00001d052104_P001	Maize	extracellular	53.22	52.95
EES05894	Sorghum	extracellular	53.09	52.82
Solyc03g044150.2.1	Tomato	extracellular	52.45	52.79
TraesCS6A01G337900.1	Wheat	extracellular	50.13	52.43
TraesCS6A01G339100.1	Wheat	extracellular, unclear	52.58	52.31
TraesCS6B01G368600.1	Wheat	extracellular	52.45	51.85
Solyc01g111400.2.1	Tomato	nucleus	51.29	51.55
HORVU6Hr1G081640.1	Barley	endoplasmic reticulum, extracellular, vacuole	52.06	51.47
TraesCS6B01G369400.1	Wheat	extracellular	51.55	51.35
TraesCS6B01G368500.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	51.93	51.27
TraesCS6A01G337800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	51.93	51.27
Solyc04g078110.1.1	Tomato	extracellular	50.39	51.04
TraesCS6A01G339200.1	Wheat	extracellular, unclear	51.55	51.02
HORVU6Hr1G081710.1	Barley	extracellular	51.42	50.96
TraesCS6D01G319800.1	Wheat	unclear	51.42	50.89
Solyc07g041970.2.1	Tomato	extracellular	49.48	50.39
TraesCS6B01G370100.1	Wheat	extracellular	50.9	50.38
TraesCS6A01G036800.1	Wheat	extracellular	51.03	50.32
TraesCS5D01G322200.1	Wheat	extracellular	50.77	50.26
TraesCS5A01G316000.1	Wheat	extracellular	50.77	50.19
Zm00001d018281_P001	Maize	plasma membrane	50.9	50.19
TraesCS6B01G051400.1	Wheat	extracellular	50.13	49.3
Solyc03g006970.1.1	Tomato	nucleus	49.1	49.16
TraesCS6B01G370000.1	Wheat	peroxisome, plastid, vacuole	52.45	49.1
HORVU6Hr1G081750.1	Barley	extracellular, plasma membrane	52.32	49.03
Solyc03g123490.1.1	Tomato	nucleus	49.36	48.98
Solyc01g091920.2.1	Tomato	extracellular	47.81	48.94
TraesCS7B01G452500.1	Wheat	extracellular	48.84	48.53
TraesCS6D01G319900.2	Wheat	golgi, unclear	52.06	48.44
HORVU6Hr1G018160.1	Barley	extracellular, mitochondrion, plasma membrane	50.77	48.17
HORVU6Hr1G081730.1	Barley	plastid	50.77	47.82
Solyc08g067990.1.1	Tomato	extracellular	48.71	47.07
Solyc06g083720.1.1	Tomato	nucleus	45.75	46.04
Solyc02g021220.1.1	Tomato	extracellular, vacuole	46.52	45.47
Os02t0780200-01	Rice	extracellular	46.01	45.19
Os02t0779000-00	Rice	extracellular	36.08	43.55
Solyc02g071580.2.1	Tomato	nucleus	41.75	41.81
Solyc07g056170.2.1	Tomato	nucleus	41.62	41.73
Solyc12g011140.1.1	Tomato	nucleus	40.46	40.67
Solyc02g071560.2.1	Tomato	extracellular, plasma membrane, vacuole	39.43	39.59
KRH06199	Soybean	endoplasmic reticulum, nucleus	67.14	36.51

Protein Annotations

MapMan:19.4.2.1.1	Gene3D:2.60.40.2310	Gene3D:3.30.70.80	Gene3D:3.40.50.200	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006508	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009653	GO:GO:0010150	GO:GO:0010223
GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0048046	InterPro:IPR036852
InterPro:IPR037045	UniProt:K4C726	InterPro:PA_domain	PFAM:PF00082	PFAM:PF02225	PFAM:PF05922
PRINTS:PR00723	ScanProsite:PS00138	PANTHER:PTHR10795	PANTHER:PTHR10795:SF331	InterPro:Peptidase_S8/S53_dom	InterPro:Peptidase_S8/S53_dom_sf
InterPro:Peptidase_S8_Ser-AS	InterPro:Peptidase_S8_subtilisin-rel	InterPro:Peptidases_S8_3	MEROPS:S08.A28	InterPro:S8pro/Inhibitor_I9	InterPro:S8pro/Inhibitor_I9_sf
SUPFAM:SSF52025	SUPFAM:SSF52743	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g062950.1	EnsemblPlants:Solyc06g062950.1.1	UniParc:UPI0002766B37
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:39729848..39732178

Molecular Weight (calculated)

82735.6 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.096

Length

776 amino acids

Sequence
(BLAST)

001: MAEISVLSIL FILSFCLAPV TISVQSDDHE TFIIHVAKSH KPHVFSTHHH WYSSIVRSVS PSSHHPSKIL YTYERAAVGF SARLTAGQAD QLRRVPGVIS
101: VIPDQVRYPH TTHTPTFLKL ADSFGLWPDS DYADDVIVGV LDTGIWPERP SFSDEGLSPV PAGWKGKCVT GPGFPRSSCN RKIIGARMFY KGYEASQGPM
201: DESKEAKSPR DTEGHGTHTA STAAGSLVAN ASFYQYAKGE ARGMAIKARI AAYKICWKTG CFDSDILAAM DQAVDDGVHV ISLSVGANGY APHYLHDSIA
301: IGAFGASEHG VLVSCSAGNS GPGPYTAVNI APWILTVGAS TIDREFPADV ILGDDRVFGG VSLYAGNPLN DSKLPVVYSG DCGSKYCYPG KLDHKKVAGK
401: IVLCDRGGNA RVEKGSAVKL AGGVGMILAN LADSGEELVA DSHLLPATMV GQKAGDEIRE YVISDPSPTA TIVFKGTVIG NSPAAPRVAA FSSRGPNHLT
501: PEILKPDVTA PGVNILAGWT GANGPTDLEI DPRRVEFNII SGTSMSCPHV SGLAALLRRA HSKWTPAAIK SALMTTAYNL DNSGKIFTDL ATGEESTPFV
601: HGSGHVDPNR ALNPGLVYDI ETSDYVNFLC TIGYDGDDIA VFVRDSSRVN CSERSLATPG DLNYPSFAVD FTSDSNGVVK YKRVVKNVGG NPNAVYEVKV
701: NAPLGVEVSV SPAKLVFSEE NNSLSYEISF TSKRSEDNIM VKGTPSAFGS IEWSDGIHSV RSPIAVRWRY QSAVSM

Best Arabidopsis Sequence Match ( AT3G14067.1 )
(BLAST)

001: MAKLSLSSIF FVFPLLLCFF SPSSSSSDGL ESYIVHVQRS HKPSLFSSHN NWHVSLLRSL PSSPQPATLL YSYSRAVHGF SARLSPIQTA ALRRHPSVIS
101: VIPDQAREIH TTHTPAFLGF SQNSGLWSNS NYGEDVIVGV LDTGIWPEHP SFSDSGLGPI PSTWKGECEI GPDFPASSCN RKLIGARAFY RGYLTQRNGT
201: KKHAAKESRS PRDTEGHGTH TASTAAGSVV ANASLYQYAR GTATGMASKA RIAAYKICWT GGCYDSDILA AMDQAVADGV HVISLSVGAS GSAPEYHTDS
301: IAIGAFGATR HGIVVSCSAG NSGPNPETAT NIAPWILTVG ASTVDREFAA NAITGDGKVF TGTSLYAGES LPDSQLSLVY SGDCGSRLCY PGKLNSSLVE
401: GKIVLCDRGG NARVEKGSAV KLAGGAGMIL ANTAESGEEL TADSHLVPAT MVGAKAGDQI RDYIKTSDSP TAKISFLGTL IGPSPPSPRV AAFSSRGPNH
501: LTPVILKPDV IAPGVNILAG WTGMVGPTDL DIDPRRVQFN IISGTSMSCP HVSGLAALLR KAHPDWSPAA IKSALVTTAY DVENSGEPIE DLATGKSSNS
601: FIHGAGHVDP NKALNPGLVY DIEVKEYVAF LCAVGYEFPG ILVFLQDPTL YDACETSKLR TAGDLNYPSF SVVFASTGEV VKYKRVVKNV GSNVDAVYEV
701: GVKSPANVEI DVSPSKLAFS KEKSVLEYEV TFKSVVLGGG VGSVPGHEFG SIEWTDGEHV VKSPVAVQWG QGSVQSF

Arabidopsis Description

SBT1.4Subtilisin-like protease SBT1.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.