Factsheet for Solyc06g083720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085430	Potato	extracellular, plasma membrane	80.16	80.26
VIT_07s0005g04410.t01	Wine grape	extracellular, plasma membrane	72.37	72.85
OQU93252	Sorghum	extracellular	58.11	56.78
Zm00001d027627_P001	Maize	extracellular	58.11	56.49
TraesCS4B01G307400.1	Wheat	extracellular	57.07	55.35
TraesCS4A01G407900.1	Wheat	extracellular	56.94	55.22
TraesCS4D01G305500.1	Wheat	extracellular	56.94	55.08
Solyc07g041970.2.1	Tomato	extracellular	46.3	46.85
Solyc06g062950.1.1	Tomato	extracellular	46.04	45.75
Solyc03g006970.1.1	Tomato	nucleus	45.91	45.68
Solyc01g091920.2.1	Tomato	extracellular	44.75	45.51
Solyc04g078110.1.1	Tomato	extracellular	44.88	45.17
Solyc03g044150.2.1	Tomato	extracellular	44.49	44.49
Solyc02g092680.1.1	Tomato	extracellular	43.32	44.36
Solyc02g092670.1.1	Tomato	extracellular	42.93	43.9
Solyc01g111400.2.1	Tomato	nucleus	43.32	43.26
Solyc08g067990.1.1	Tomato	extracellular	44.49	42.71
Solyc03g123490.1.1	Tomato	nucleus	43.32	42.71
Solyc02g021220.1.1	Tomato	extracellular, vacuole	42.02	40.81
Solyc07g056170.2.1	Tomato	nucleus	40.73	40.57
Solyc02g071580.2.1	Tomato	nucleus	40.47	40.26
Solyc12g011140.1.1	Tomato	nucleus	39.17	39.12
Solyc02g071560.2.1	Tomato	extracellular, plasma membrane, vacuole	38.78	38.68

Protein Annotations

MapMan:19.4.2.1.1	Gene3D:2.60.40.2310	Gene3D:3.30.70.80	Gene3D:3.40.50.200	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR036852	InterPro:IPR037045	UniProt:K4CAM7	InterPro:PA_domain	PFAM:PF00082
PFAM:PF02225	PFAM:PF05922	PRINTS:PR00723	ScanProsite:PS00138	PANTHER:PTHR10795	PANTHER:PTHR10795:SF350
InterPro:Peptidase_S8/S53_dom	InterPro:Peptidase_S8/S53_dom_sf	InterPro:Peptidase_S8_Ser-AS	InterPro:Peptidase_S8_subtilisin-rel	InterPro:Peptidases_S8_3	MEROPS:S08.084
InterPro:S8pro/Inhibitor_I9	InterPro:S8pro/Inhibitor_I9_sf	SUPFAM:SSF52743	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g083720.1	EnsemblPlants:Solyc06g083720.1.1
UniParc:UPI000276B5E8	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:49070229..49073159

Molecular Weight (calculated)

83992.1 Da

IEP (calculated)

9.881

GRAVY (calculated)

-0.114

Length

771 amino acids

Sequence
(BLAST)

001: MELKFQFYFL CFLLCFIPLL QAQNFRTYIV QLHPQHASTR TPFSSKLQWH LSFLENFISS GENSSSRLLY SYHSAFEGFA ALLSENELKA LKKSNDVLSI
101: YPERKLEVQT TYSYKFLGLS PTKEGTWLKS GFGRGAIIGV LDTGIWPESP SFVDHGMSPI PKKWKGICQE GKNFNSSSCN RKLIGARFFQ IGHMMASKIS
201: KSIDFVEDYV SPRDSEGHGT HTASTAGGAP VPMASVLGNG AGEARGMAPG AHIAIYKVCW SSGCYSSDIL AAMDVAIRDG VDILSLSIGG FPVPLFEDTI
301: AIGSFRAMER GISVICAAGN NGPIRSSVAN EAPWIATIGA STLDRKFPAI IQLGNGKYVY GESLYPGKQV HNSQKVLEIV YLSDGDNGSE FCLRGSLPRA
401: KVRGKIVVCD RGVNGRAEKG QVVKESGGVA MILANTAVNM EEDSVDVHVL PATLIGFDES IQLQSYMNST RKPTARIIFG GTVIGKSSAP AVAQFSSRGP
501: SFTDPSILKP DMIAPGVNII AAWPQNLGPS GLAEDSRRVN FTVLSGTSMA CPHVSGIAAL LHSIHPKWSP AAIKSALMTT ADTTNHQGKS IMDGDTPAGL
601: FAIGAGHVNP GRSDDPGLIY DIIAKDYITH LCTIGYKNSE IFSITHKNVS CHDVLQKKRG FSLNYPSISV IFKAGKTRKM ITRRVTNVGS PNSTYSVEIV
701: EPEGVKVRVK PRRLVFKRVN QSLSYRVWFI SRKRIGTQKR SFAEGQLMWI NSRDKYQKVR SPISVAWASK K

Best Arabidopsis Sequence Match ( AT1G04110.1 )
(BLAST)

001: MEPKPFFLCI IFLLFCSSSS EILQKQTYIV QLHPNSETAK TFASKFDWHL SFLQEAVLGV EEEEEEPSSR LLYSYGSAIE GFAAQLTESE AEILRYSPEV
101: VAVRPDHVLQ VQTTYSYKFL GLDGFGNSGV WSKSRFGQGT IIGVLDTGVW PESPSFDDTG MPSIPRKWKG ICQEGESFSS SSCNRKLIGA RFFIRGHRVA
201: NSPEESPNMP REYISARDST GHGTHTASTV GGSSVSMANV LGNGAGVARG MAPGAHIAVY KVCWFNGCYS SDILAAIDVA IQDKVDVLSL SLGGFPIPLY
301: DDTIAIGTFR AMERGISVIC AAGNNGPIES SVANTAPWVS TIGAGTLDRR FPAVVRLANG KLLYGESLYP GKGIKNAGRE VEVIYVTGGD KGSEFCLRGS
401: LPREEIRGKM VICDRGVNGR SEKGEAVKEA GGVAMILANT EINQEEDSID VHLLPATLIG YTESVLLKAY VNATVKPKAR IIFGGTVIGR SRAPEVAQFS
501: ARGPSLANPS ILKPDMIAPG VNIIAAWPQN LGPTGLPYDS RRVNFTVMSG TSMSCPHVSG ITALIRSAYP NWSPAAIKSA LMTTADLYDR QGKAIKDGNK
601: PAGVFAIGAG HVNPQKAINP GLVYNIQPVD YITYLCTLGF TRSDILAITH KNVSCNGILR KNPGFSLNYP SIAVIFKRGK TTEMITRRVT NVGSPNSIYS
701: VNVKAPEGIK VIVNPKRLVF KHVDQTLSYR VWFVLKKKNR GGKVASFAQG QLTWVNSHNL MQRVRSPISV TLKTN

Arabidopsis Description

SBT1.2SDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WPN6]
SUBAcon: [extracellular,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.