Factsheet for Solyc05g024410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046550	Potato	cytosol	32.21	92.92
VIT_12s0057g01080.t01	Wine grape	cytosol	68.71	68.5
KRH43755	Soybean	cytosol	67.79	67.38
Bra029671.1-P	Field mustard	cytosol	24.85	66.94
Os09t0249000-01	Rice	cytosol, plasma membrane, plastid	67.79	66.57
AT3G07720.1	Thale cress	cytosol	67.18	66.57
HORVU5Hr1G051310.1	Barley	cytosol, mitochondrion, peroxisome	66.56	66.36
CDY28023	Canola	cytosol	66.56	66.36
CDY35957	Canola	cytosol	66.56	66.36
TraesCS5D01G172400.1	Wheat	mitochondrion	66.26	66.06
TraesCS5B01G165000.1	Wheat	mitochondrion	65.34	65.14
TraesCS5A01G168200.1	Wheat	mitochondrion	65.34	65.14
KXG34722	Sorghum	cytosol	65.34	63.2
Zm00001d019221_P001	Maize	cytosol	65.95	56.28
CDY48738	Canola	cytosol	54.91	55.59
CDY05697	Canola	cytosol	54.91	55.59
CDX85317	Canola	cytosol	53.99	54.66
Bra037506.1-P	Field mustard	cytosol	53.68	54.35
AT5G48180.1	Thale cress	cytosol	54.29	54.29
Bra020713.1-P	Field mustard	cytosol	19.33	52.94
CDX86322	Canola	cytosol	53.99	51.16
CDY30169	Canola	cytosol	47.85	48.3
CDY19142	Canola	cytosol, peroxisome, plastid	47.85	44.44
CDY52048	Canola	plastid	47.55	44.16
AT1G54040.2	Thale cress	cytosol	45.09	43.11
CDX94790	Canola	cytosol	45.09	42.86
CDY36630	Canola	cytosol	44.79	42.57
CDY49014	Canola	cytosol	44.79	42.57
CDY51408	Canola	cytosol	44.79	42.57
CDY08215	Canola	cytosol	45.09	42.24
CDX96969	Canola	peroxisome	43.87	41.69
Bra039702.1-P	Field mustard	cytosol	32.82	40.68
CDY30681	Canola	cytosol	43.25	40.52
Bra037958.1-P	Field mustard	cytosol	32.52	40.3
CDY56199	Canola	cytosol	49.39	38.98
CDY64894	Canola	cytosol, mitochondrion	30.37	38.37
CDY65743	Canola	cytosol, peroxisome, plastid	47.55	36.64
CDY03963	Canola	cytosol	50.61	35.33
AT3G16400.1	Thale cress	cytosol	50.61	35.11
CDX92073	Canola	cytosol	50.61	34.96
CDY20194	Canola	cytosol	50.0	34.9
CDY28366	Canola	cytosol	49.39	34.48
AT2G33070.3	Thale cress	cytosol	49.39	34.04
AT3G16390.2	Thale cress	cytosol	48.47	33.83
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	47.85	33.69
CDY03958	Canola	cytosol	48.16	33.69
CDY24063	Canola	cytosol, mitochondrion	27.61	31.69
Bra040923.1-P	Field mustard	cytosol	47.85	30.65
AT3G16410.1	Thale cress	cytosol	48.77	25.69
Bra018943.1-P	Field mustard	cytosol	15.64	25.37
Bra022157.1-P	Field mustard	cytosol	8.9	23.02
Bra021175.1-P	Field mustard	cytosol	15.95	20.08
Bra018944.1-P	Field mustard	cytosol	48.47	19.95
CDY60589	Canola	cytosol	47.85	19.7
Solyc03g114960.2.1	Tomato	nucleus	26.07	15.68
Solyc11g007320.1.1	Tomato	cytosol	23.62	15.37
Bra022159.1-P	Field mustard	cytosol	11.35	14.02
Solyc11g007960.1.1	Tomato	cytosol	20.25	13.41
Solyc01g099350.2.1	Tomato	extracellular	23.93	11.66
Solyc03g111390.2.1	Tomato	nucleus	23.93	11.54
Solyc01g067480.2.1	Tomato	mitochondrion	21.78	10.81
Solyc05g055610.2.1	Tomato	cytosol	22.09	7.24
Solyc01g100600.2.1	Tomato	cytosol	10.12	6.61

Protein Annotations

EnsemblPlants:Solyc05g024410.2.1	EnsemblPlantsGene:Solyc05g024410.2	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	PFAM:PF01344
PFAM:PF13415	PFAM:PF13418	SUPFAM:SSF117281	UniParc:UPI0002765AE3	UniProt:K4BZS8	MapMan:35.1

Description

No Description!

Coordinates

chr5:+:31650811..31654017

Molecular Weight (calculated)

35682.8 Da

IEP (calculated)

4.713

GRAVY (calculated)

-0.327

Length

326 amino acids

Sequence
(BLAST)

001: MAAAATQGKW IKLEEKGAGP GARSSHAITI VGHKVYSFGG EFTPRVPVDN KLYVFDLNSQ EWSVADAAGD VPPPRVGVTM ATVGETVFIF GGRDAEHMEL
101: NELYSFDTTT NKWTLLSSGD DDDPPHRSYH SMTADDRRIY VFGGCGNAGR LNDLWGYDVV DKKWIKYPVP GENCKPRGGP GLTVVLGKIW VVYGFSGDEL
201: DDVHYFDTIE EKWMQVGTNG EKPTARSVFS TVGIGKFIFI YGGETDPSDL GHLGAGKFAG DVYALDTETL VWKRWMDSGD HPGPRGWCAF ASGQRDGQEG
301: LLVYGGNTPC NDRLGDIFFF TPLVEI

Best Arabidopsis Sequence Match ( AT3G07720.1 )
(BLAST)

001: MAATPMEGKW VQLKQKGTGP GARSSHAIAL VGNKMYAFGG EFQPRVPVDN QLYVFDLETQ TWSIQEASGD APPPRVGVAM AAVGPIIYFF GGRDSTHQEL
101: NELYCFNTLT NQWKLLSSGE TGPQNRSYHS ITADSQNVYV FGGCGVDGRL NDLWAYNVVD QKWIKFPSPG EACRGRGGPG LEVVQGKIWV VYGFAGEEAD
201: DVHCFDIAKG EWKEVETKGE KPSARSVFST AVVGKQILIS GGEIDPSDLG HMGAGCFTGD AYGLDTETLE WRKWEDGVGS VEHPGPRGWC AFAAGSRDGK
301: QGLLVYGGNS PSNDRLDDIF FFTPNTLLK

Arabidopsis Description

AT3g07720/F17A17_6 [Source:UniProtKB/TrEMBL;Acc:Q9S7W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.