CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020713.1-P	Field mustard	cytosol	36.65	99.16
CDY48738	Canola	cytosol	97.52	97.52
CDX85317	Canola	cytosol	89.44	89.44
CDX86322	Canola	cytosol	89.75	84.01
AT5G48180.1	Thale cress	cytosol	84.78	83.74
CDY28023	Canola	cytosol	56.83	55.96
KRH43755	Soybean	cytosol	56.52	55.49
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	55.59	54.91
CDY35957	Canola	cytosol	55.59	54.74
PGSC0003DMT400046550	Potato	cytosol	18.94	53.98
VIT_12s0057g01080.t01	Wine grape	cytosol	54.35	53.52
Os09t0249000-01	Rice	cytosol, plasma membrane, plastid	54.04	52.41
KXG34722	Sorghum	cytosol	53.11	50.74
CDY52048	Canola	plastid	54.35	49.86
CDY19142	Canola	cytosol, peroxisome, plastid	54.04	49.57
TraesCS5B01G165000.1	Wheat	mitochondrion	50.31	49.54
HORVU5Hr1G051310.1	Barley	cytosol, mitochondrion, peroxisome	50.31	49.54
TraesCS5D01G172400.1	Wheat	mitochondrion	50.31	49.54
CDY30169	Canola	cytosol	49.69	49.54
TraesCS5A01G168200.1	Wheat	mitochondrion	50.0	49.24
CDY51408	Canola	cytosol	48.14	45.19
CDX96969	Canola	peroxisome	47.52	44.61
CDY36630	Canola	cytosol	47.52	44.61
Zm00001d019221_P001	Maize	cytosol	52.48	44.24
CDX94790	Canola	cytosol	46.89	44.02
CDY08215	Canola	cytosol	47.52	43.97
CDY49014	Canola	cytosol	46.58	43.73
CDY30681	Canola	cytosol	45.03	41.67
CDY64894	Canola	cytosol, mitochondrion	32.92	41.09
CDY56199	Canola	cytosol	50.0	38.98
CDY65743	Canola	cytosol, peroxisome, plastid	50.0	38.06
CDY03958	Canola	cytosol	52.8	36.48
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.17	36.29
CDY03963	Canola	cytosol	52.48	36.19
CDY20194	Canola	cytosol	52.17	35.97
CDY43093	Canola	cytosol	9.01	35.8
CDY28366	Canola	cytosol	51.55	35.55
CDX92073	Canola	cytosol	51.86	35.38
CDY24063	Canola	cytosol, mitochondrion	29.81	33.8
CDY60589	Canola	cytosol	51.86	21.09
CDY19228	Canola	nucleus	25.16	15.67
CDY26745	Canola	nucleus	25.16	15.67
CDX96712	Canola	mitochondrion	24.84	15.27
CDY42440	Canola	mitochondrion	22.36	14.88
CDY49133	Canola	mitochondrion, nucleus	22.36	14.69
CDX75043	Canola	cytosol	20.81	14.69
CDX83831	Canola	nucleus	23.6	14.23
CDX84132	Canola	cytosol	21.43	13.94
CDX75048	Canola	cytosol, plastid	21.12	13.65
CDY11290	Canola	cytosol	20.5	13.12
CDY58438	Canola	cytosol	20.5	13.12
CDY67946	Canola	cytosol	13.98	12.82
CDX73059	Canola	cytosol, mitochondrion	22.36	12.37
CDY05166	Canola	cytosol, nucleus, plastid	24.53	11.86
CDY18797	Canola	cytosol	24.53	11.86
CDY27769	Canola	cytosol	24.53	11.86
CDX74147	Canola	cytosol, nucleus, plastid	24.53	11.86
CDX96521	Canola	mitochondrion	22.67	11.85
CDY18777	Canola	cytosol	24.22	11.73
CDY40708	Canola	cytosol	24.22	11.71
CDY05568	Canola	plastid	23.91	11.54
CDY25029	Canola	cytosol, nucleus, plastid	23.29	11.19
CDY34042	Canola	nucleus	21.43	10.41
CDY13903	Canola	mitochondrion	19.57	9.35
CDX92598	Canola	mitochondrion	19.57	9.0
CDX75045	Canola	cytosol	20.81	7.99
CDX83165	Canola	nucleus	21.43	6.96
CDY21313	Canola	cytosol	20.19	6.55
CDX90875	Canola	cytosol	20.19	6.44
CDY43091	Canola	cytosol	0.93	2.65
CDY65828	Canola	cytosol	2.17	2.15
CDY72137	Canola	cytosol	0.93	1.95

Protein Annotations

EnsemblPlants:CDY05697	EnsemblPlantsGene:GSBRNA2T00120710001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF351	PFAM:PF01344
PFAM:PF13418	ProteinID:CDY05697	ProteinID:CDY05697.1	SUPFAM:SSF117281	UniParc:UPI0004EC4825	MapMan:35.1

Description

BnaC02g38400D

Coordinates

chrLK031963:+:1008807..1010412

Molecular Weight (calculated)

35101.4 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.292

Length

322 amino acids

Sequence
(BLAST)

001: MSPVAENKWV KVGQKGSGPG PRSSHALTVV GDKVYCFGGE LKPTIHIDND LYVFDLQTQE WSIAPATGDA PFPCFGVLMV PIGTTIYVYG GRDDTRRYNG
101: LYSYDTLTNK WELLSPVEEG LPGRSYHSMA CDDRNVYVFG GVTAKGRVNT LHGYDVVGRK WVEYPAGGEA CKGRGGPGLV VVEGKVWVLF GFDGNELGDI
201: HCFDLGSGQW TAVETTGDVP PARSVFPAVR SGKQIVVYGG EEEPHELMHM GAGKLSGEVY RLDTETLVWE KVVDGTEEGK KPSPRGWCAF AVAVKDGEEG
301: LLVHGGNSPT NERLDDMVFW RF

Best Arabidopsis Sequence Match ( AT5G48180.1 )
(BLAST)

001: MCPVENKWLK VGQKGAGPGA RSSHAMTVVG NKVYCFGGEL KPTIHIDNDL YVFDLETQEW SIAPATGEAP FPCFGVSMVT IGSTIYVYGG RDDKRRYNGL
101: HSYDTETNEW KLLAPVEEGL PGRSYHSMAG DDRKVYVFGG VTAKGRVNTL HAYDVVDQKW VEYPAAGEAC KGRGAPGLVV VEGRIWVLFG FDGNELGDIH
201: CFDLASEQWK AVETTGDVPA ARSVFPAVSY GKYIVIYGGE EEPHELMHMG AGKMSGEVYQ LDTETLVWER IVCGNEEEKP SQRGWCAFTK AVKDGEEGLL
301: VHGGNSPTNE RLDDLVFWGF SHLNVN

Arabidopsis Description

NSP5Nitrile-specifier protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q93XW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.