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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000803.1-P Field mustard cytosol 96.93 99.09
CDY21313 Canola cytosol 93.86 95.46
AT4G04670.1 Thale cress cytosol 81.67 82.81
VIT_10s0116g01770.t01 Wine grape cytosol 61.45 59.5
Solyc05g055610.2.1 Tomato cytosol 57.09 57.95
KRH51088 Soybean cytosol 60.75 57.02
PGSC0003DMT400060067 Potato cytosol 42.12 56.89
KRH02069 Soybean cytosol 31.42 51.46
GSMUA_Achr6P29460_001 Banana cytosol 52.23 49.39
TraesCS2A01G223200.1 Wheat cytosol 52.33 48.57
TraesCS2B01G248800.1 Wheat cytosol 52.23 48.48
TraesCS2D01G229200.1 Wheat cytosol 52.03 48.3
HORVU2Hr1G046680.19 Barley cytosol 52.23 48.22
KXG36320 Sorghum cytosol, nucleus, peroxisome 51.04 47.64
Zm00001d021624_P002 Maize mitochondrion 50.35 46.86
CDY28023 Canola cytosol 6.84 21.1
CDY05697 Canola cytosol 6.44 20.19
CDY35957 Canola cytosol 6.54 20.18
CDY48738 Canola cytosol 6.34 19.88
CDX85317 Canola cytosol 6.14 19.25
CDX86322 Canola cytosol 6.54 19.19
CDY26745 Canola nucleus 9.81 19.15
CDY19228 Canola nucleus 9.71 18.96
CDY49133 Canola mitochondrion, nucleus 9.12 18.78
CDX83831 Canola nucleus 9.91 18.73
CDX96712 Canola mitochondrion 9.71 18.7
CDX75043 Canola cytosol 8.42 18.64
CDY67946 Canola cytosol 6.44 18.52
CDX75048 Canola cytosol, plastid 9.12 18.47
CDY42440 Canola mitochondrion 8.72 18.18
CDX84132 Canola cytosol 8.92 18.18
CDY19142 Canola cytosol, peroxisome, plastid 6.24 17.95
CDY52048 Canola plastid 6.24 17.95
CDY27769 Canola cytosol 11.79 17.87
CDY05166 Canola cytosol, nucleus, plastid 11.79 17.87
CDY40708 Canola cytosol 11.79 17.87
CDY64894 Canola cytosol, mitochondrion 4.56 17.83
CDY18777 Canola cytosol 11.69 17.74
CDY18797 Canola cytosol 11.69 17.72
CDX74147 Canola cytosol, nucleus, plastid 11.4 17.27
CDX73059 Canola cytosol, mitochondrion 9.61 16.67
CDX96521 Canola mitochondrion 9.91 16.23
CDY05568 Canola plastid 10.7 16.19
CDY30169 Canola cytosol 5.15 16.1
CDY25029 Canola cytosol, nucleus, plastid 10.6 15.97
CDY08215 Canola cytosol 5.35 15.52
CDY58438 Canola cytosol 7.73 15.51
CDY11290 Canola cytosol 7.73 15.51
CDY51408 Canola cytosol 5.25 15.45
CDY36630 Canola cytosol 5.25 15.45
CDY49014 Canola cytosol 5.05 14.87
CDX96969 Canola peroxisome 5.05 14.87
CDX94790 Canola cytosol 5.05 14.87
CDY30681 Canola cytosol 5.05 14.66
CDY34042 Canola nucleus 9.51 14.48
CDY28366 Canola cytosol 6.64 14.35
CDY03958 Canola cytosol 6.54 14.16
CDY20194 Canola cytosol 6.54 14.13
CDY24063 Canola cytosol, mitochondrion 3.96 14.08
CDY56199 Canola cytosol 5.75 14.04
CDY13903 Canola mitochondrion 9.32 13.95
CDY03963 Canola cytosol 6.44 13.92
CDY56200 Canola endoplasmic reticulum, extracellular, plasma membrane 6.24 13.61
CDY65743 Canola cytosol, peroxisome, plastid 5.65 13.48
CDX92073 Canola cytosol 6.24 13.35
CDX92598 Canola mitochondrion 9.12 13.14
CDY43093 Canola cytosol 0.89 11.11
CDX75045 Canola cytosol 8.92 10.73
CDX83165 Canola nucleus 9.61 9.78
CDY60589 Canola cytosol 7.14 9.09
CDY43091 Canola cytosol 0.69 6.19
CDY72137 Canola cytosol 0.79 5.19
CDY65828 Canola cytosol 1.39 4.31
Protein Annotations
KEGG:00350+2.1.1.28Gene3D:2.120.10.80Gene3D:3.30.1960.10Gene3D:3.40.50.150MapMan:35.1GO:A0A078DNS7
EnsemblPlants:CDX90875ProteinID:CDX90875ProteinID:CDX90875.1GO:GO:0003674GO:GO:0005488GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00151597001InterPro:IPR015915InterPro:IPR030382InterPro:IPR036602InterPro:Kelch-typ_b-propellerInterPro:Kelch_1
InterPro:MeTrfase_TRM5/TYW2PFAM:PF01344PFAM:PF02475PFAM:PF02676PFAM:PF13418PFAM:PF13964
PFscan:PS51684PANTHER:PTHR23245PANTHER:PTHR23245:SF25MetaCyc:PWY-6342MetaCyc:PWY-7286InterPro:SAM-dependent_MTases
SUPFAM:SSF111278SUPFAM:SSF117281SUPFAM:SSF53335UniParc:UPI0004EF200BSEG:segInterPro:tRNA_yW-synthesising
InterPro:tRNA_yW-synthesising-like_sf:::::
Description
BnaA03g25550D
Coordinates
chrLK031864:+:1032252..1036838
Molecular Weight (calculated)
112235.0 Da
IEP (calculated)
6.992
GRAVY (calculated)
-0.173
Length
1009 amino acids
Sequence
(BLAST)
0001: MEFEKRKAAT LASIRSSVTD KSPKGFLDEP ILPLLETINH HPSYFTTSSC SGRISILSQP KPLSTTNPSS KKKARGGSWL YITHDPADPE SVLHLLFSPP
0101: SEPLDQPSEL VFRFEPLIIA VECKDVRSAQ FLVATAISAG FRESGITCYG EGKRVIIAIR CSIRMEVPLG DTGKVMVSRE YVRFLVDVAN EKMVANRKRT
0201: DGFGFALLSN GFKNPDDAND VDEEDNFENL AENHESSISN GDLLPGNSLS SILYMEFMFY ISKSLAGPHQ DLMPLSTISI TGESVEKLHI WGHSACTINK
0301: TDRKEVIVFG GFGGFGRHAR RNESMLLDPS GGTLKLITVH ESPSPRLGHT ASMVGDYMFV IGGRADPLNI LNDVWMLDIS KCEWSLQRCI GCEFPPRHRH
0401: AAAKIGSNVY IFGGLNQDMI LSSLHILDTK NLQWKEIEQR GQLPCARHSH DMVAYESQLF MFGGYNGEKV LDDLYSFDVQ SCSWKLEMVS GKWPQARFSH
0501: SMFVYKHVIG IIGGCPVSRN CHDLVLLDLK HRLWRSVRLD FMNKELLVRS TASVIGDDLI VIGGGAACYA FGTKFSEPVK INLLQSLTMS GNDVEASIQV
0601: KTEASLSQPC VIQLERKYAK LGKDILKNFG WLDLERKVYS HEKGLYICFP VTEKFSALFH EKQLLDKDLG GSEDNHLTSQ LTKGLSLKEI SSSVALNLLK
0701: EVGARKFTNV AVEAKKVAKS PLQRMKEAVT SILKQKGLPE ELLDELPQKW ERLGDIVVLP VTSFKDPAWS SISEEVWSAV AISLSANRLA RQGRVEANGT
0801: RDSTLEILVG DDGWVDHREN GILYSFNATK CMFSWGNLSE KLRMGNVACE NEVVVDLFAG IGYFTLPFLV RAKAKLVYAC EWNPHAIEAL RHNVEANFVS
0901: DRCIILDGDN RINAPKGVAD RVCLGLIPTS EGSWVTAIQA LRSPEGGILH VHGNVKDSDV SSWSEHVSKS LSDIARAEGR SWEVTVEHIE KVKWYAPRIR
1001: HLVADVRCR
Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
Arabidopsis Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.