Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G229200.1 | Wheat | cytosol | 57.73 | 56.67 |
| TraesCS2A01G223200.1 | Wheat | cytosol | 57.54 | 56.49 |
| KXG36320 | Sorghum | cytosol, nucleus, peroxisome | 57.08 | 56.34 |
| TraesCS2B01G248800.1 | Wheat | cytosol | 57.26 | 56.21 |
| HORVU2Hr1G046680.19 | Barley | cytosol | 57.36 | 55.99 |
| PGSC0003DMT400060067 | Potato | cytosol | 39.18 | 55.96 |
| VIT_10s0116g01770.t01 | Wine grape | cytosol | 54.55 | 55.85 |
| Solyc05g055610.2.1 | Tomato | cytosol | 51.45 | 55.23 |
| Zm00001d021624_P002 | Maize | mitochondrion | 55.67 | 54.8 |
| KRH51088 | Soybean | cytosol | 54.45 | 54.05 |
| Bra000803.1-P | Field mustard | cytosol | 49.39 | 53.39 |
| AT4G04670.1 | Thale cress | cytosol | 49.77 | 53.37 |
| CDX90875 | Canola | cytosol | 49.39 | 52.23 |
| CDY21313 | Canola | cytosol | 48.27 | 51.92 |
| KRH02069 | Soybean | cytosol | 28.12 | 48.7 |
| GSMUA_Achr3P30430_001 | Banana | cytosol | 8.81 | 20.0 |
| GSMUA_Achr8P07640_001 | Banana | cytosol | 9.09 | 19.44 |
| GSMUA_Achr2P02340_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 12.18 | 19.29 |
| GSMUA_Achr10P... | Banana | cytosol | 4.03 | 18.94 |
| GSMUA_Achr6P20340_001 | Banana | plastid | 11.81 | 18.48 |
| GSMUA_Achr9P23600_001 | Banana | cytosol | 8.81 | 16.73 |
| GSMUA_Achr8P29940_001 | Banana | cytosol | 9.37 | 15.87 |
| GSMUA_Achr3P23920_001 | Banana | mitochondrion | 10.12 | 15.19 |
| GSMUA_Achr5P26950_001 | Banana | mitochondrion, nucleus | 9.37 | 14.04 |
| GSMUA_Achr10P... | Banana | nucleus | 5.81 | 12.53 |
Protein Annotations
| Gene3D:2.120.10.80 | Gene3D:3.30.1960.10 | Gene3D:3.40.50.150 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSMUA_Achr6G29460_001 | EnsemblPlants:GSMUA_Achr6P29460_001 | EnsemblPlants:GSMUA_Achr6T29460_001 | InterPro:IPR015915 |
| InterPro:IPR030382 | InterPro:IPR036602 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_2 | UniProt:M0TB91 | InterPro:MeTrfase_TRM5/TYW2 |
| PFAM:PF02475 | PFAM:PF02676 | PFAM:PF07646 | PFAM:PF13964 | PFscan:PS51684 | PANTHER:PTHR23245 |
| PANTHER:PTHR23245:SF25 | InterPro:SAM-dependent_MTases | SUPFAM:SSF111278 | SUPFAM:SSF117281 | SUPFAM:SSF53335 | UniParc:UPI000296AC86 |
| SEG:seg | InterPro:tRNA_yW-synthesising | InterPro:tRNA_yW-synthesising-like_sf | : | : | : |
Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29460_001]
Coordinates
chr6:-:29685896..29700033
Molecular Weight (calculated)
117861.0 Da
IEP (calculated)
7.651
GRAVY (calculated)
-0.131
Length
1067 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEFEKRKAAV MATLAAQAPD KSPKGAVDAP IVPVLDALNR HHSYFTTSSC SGRISILAHG RRPAPDAGAV EGDGNKTASK KKAAGGSWLF VSHDPADPAA
0101: VVDLLFGSPE KSVEGDLVFR FEPLIIAVEC RDVAAAQVLV STAISCGFRE SGITNTQKRI MVAIRCSIRL EVPLGQMDHI LVTAQYVHYL VTIANDKMEI
0201: NRKRTESFLH VLQCKGLSGS SKEIIDCSQE DCNQMVGKGN SLDIEAKTNM YLETGRRNTI VGKGLRSIMP DQEKVRNLHG DLSLCIISGT SRSSLSVVML
0301: KIVGEPIEKL SLWGQSACAL NIKGKEQVIV FGGFGGLGRH ARSNYSLLLD PQSGLLRKIE VASSPPPRMG HTSSLVGSSI FVIGGRAGPL EILNDVWVLE
0401: TTENRWSLLD CSGQVFNPRH RHAAVTMDSK IYVFGGLNNE VIYSCMNVLD TQTMKWSEVN ISGEWPCARH SHSMVAIGSQ LFMFGGYDGE KALGDLYSFD
0501: GKTLRWKREK TTGRAPFPRF SHSMFVYKTY LGIIGGCPVR QHYQELSLLN LTCHVWVHVT IDSFGRELWV RSSTCVVDDE LVIIGGGASC YAFGTKFNQP
0601: MKINLQLLES TGYLCPETEY QSVIQYNKTN MLGSSLCNNY PHGASCDSEP NKLVDRSCNG NGHDTKEYVL QIKKNCAKFA KDVIKKFGYL DLSRNVQPSP
0701: DGFYICLPIT REFYGLVQEK QLTQLNDTND YSDNFHAYLK DHSVNEVSLS TALSILLSCG GSLLIDNVAC SKKFHKSPQK TLRESVCSLL TEKGMPLQLL
0801: EQIPARWEHL GDIIVLPKTA FMDPRWDSVG EELWPIVAKS LGAQRLARQG RILPTGTRDS TLEILLGENG RVTHHENGII YSFDATKCMF SSGNLSEKRR
0901: IAQLDCADEI IVDLFAGIGY FVLPFLVKAR AKLAYACEWN PHAIEALQQN VHINSVADRC IILEGDNRIT APRGVANRVC LGLLPSSECS WNVAVRALRA
1001: EGGILHVHGN VNDSEESSWL EHVIKSISNI ACSEGLLWDV SIHHLERVKW YGPHIRHLVA DIRCKQL
0101: VVDLLFGSPE KSVEGDLVFR FEPLIIAVEC RDVAAAQVLV STAISCGFRE SGITNTQKRI MVAIRCSIRL EVPLGQMDHI LVTAQYVHYL VTIANDKMEI
0201: NRKRTESFLH VLQCKGLSGS SKEIIDCSQE DCNQMVGKGN SLDIEAKTNM YLETGRRNTI VGKGLRSIMP DQEKVRNLHG DLSLCIISGT SRSSLSVVML
0301: KIVGEPIEKL SLWGQSACAL NIKGKEQVIV FGGFGGLGRH ARSNYSLLLD PQSGLLRKIE VASSPPPRMG HTSSLVGSSI FVIGGRAGPL EILNDVWVLE
0401: TTENRWSLLD CSGQVFNPRH RHAAVTMDSK IYVFGGLNNE VIYSCMNVLD TQTMKWSEVN ISGEWPCARH SHSMVAIGSQ LFMFGGYDGE KALGDLYSFD
0501: GKTLRWKREK TTGRAPFPRF SHSMFVYKTY LGIIGGCPVR QHYQELSLLN LTCHVWVHVT IDSFGRELWV RSSTCVVDDE LVIIGGGASC YAFGTKFNQP
0601: MKINLQLLES TGYLCPETEY QSVIQYNKTN MLGSSLCNNY PHGASCDSEP NKLVDRSCNG NGHDTKEYVL QIKKNCAKFA KDVIKKFGYL DLSRNVQPSP
0701: DGFYICLPIT REFYGLVQEK QLTQLNDTND YSDNFHAYLK DHSVNEVSLS TALSILLSCG GSLLIDNVAC SKKFHKSPQK TLRESVCSLL TEKGMPLQLL
0801: EQIPARWEHL GDIIVLPKTA FMDPRWDSVG EELWPIVAKS LGAQRLARQG RILPTGTRDS TLEILLGENG RVTHHENGII YSFDATKCMF SSGNLSEKRR
0901: IAQLDCADEI IVDLFAGIGY FVLPFLVKAR AKLAYACEWN PHAIEALQQN VHINSVADRC IILEGDNRIT APRGVANRVC LGLLPSSECS WNVAVRALRA
1001: EGGILHVHGN VNDSEESSWL EHVIKSISNI ACSEGLLWDV SIHHLERVKW YGPHIRHLVA DIRCKQL
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
Arabidopsis Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.