Factsheet for Zm00001d021624_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36320	Sorghum	cytosol, nucleus, peroxisome	90.77	91.03
TraesCS2D01G229200.1	Wheat	cytosol	71.22	71.02
TraesCS2A01G223200.1	Wheat	cytosol	71.13	70.93
TraesCS2B01G248800.1	Wheat	cytosol	71.03	70.84
HORVU2Hr1G046680.19	Barley	cytosol	70.11	69.53
GSMUA_Achr6P29460_001	Banana	cytosol	54.8	55.67
Solyc05g055610.2.1	Tomato	cytosol	48.25	52.62
VIT_10s0116g01770.t01	Wine grape	cytosol	50.0	52.02
AT4G04670.1	Thale cress	cytosol	47.32	51.56
Bra000803.1-P	Field mustard	cytosol	46.68	51.27
PGSC0003DMT400060067	Potato	cytosol	34.96	50.74
CDY21313	Canola	cytosol	46.31	50.6
CDX90875	Canola	cytosol	46.86	50.35
KRH51088	Soybean	cytosol	49.08	49.49
KRH02069	Soybean	cytosol	25.18	44.32
Zm00001d037558_P001	Maize	cytosol	2.21	19.83
Zm00001d034759_P001	Maize	cytosol	8.86	19.2
Zm00001d034758_P003	Maize	plastid	10.7	17.03
Zm00001d041692_P001	Maize	nucleus	8.39	16.76
Zm00001d019221_P001	Maize	cytosol	5.81	16.49
Zm00001d009123_P001	Maize	cytosol	9.04	15.68
Zm00001d040606_P001	Maize	cytosol	8.86	15.48
Zm00001d046434_P003	Maize	plastid	8.58	15.27
Zm00001d031492_P001	Maize	cytosol	1.94	14.69
Zm00001d051876_P002	Maize	nucleus	8.03	14.65
Zm00001d012892_P002	Maize	plastid	10.52	14.56
Zm00001d048718_P010	Maize	mitochondrion	8.95	13.96
Zm00001d003259_P006	Maize	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	8.49	12.96
Zm00001d038406_P001	Maize	cytosol	2.58	12.84
Zm00001d023868_P004	Maize	plasma membrane, plastid, vacuole	8.86	12.55

Protein Annotations

EntrezGene:103633227	Gene3D:2.120.10.80	Gene3D:3.30.1960.10	Gene3D:3.40.50.150	MapMan:35.1	UniProt:A0A1D6ICZ6
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:IPR015915	InterPro:IPR030382
InterPro:IPR036602	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:MeTrfase_TRM5/TYW2	ProteinID:ONM57717.1	PFAM:PF01344
PFAM:PF02475	PFAM:PF02676	PFAM:PF13418	PFscan:PS51684	PANTHER:PTHR23245	PANTHER:PTHR23245:SF25
InterPro:SAM-dependent_MTases	SUPFAM:SSF111278	SUPFAM:SSF117281	SUPFAM:SSF53335	UniParc:UPI0008435456	EnsemblPlantsGene:Zm00001d021624
EnsemblPlants:Zm00001d021624_P002	EnsemblPlants:Zm00001d021624_T002	SEG:seg	InterPro:tRNA_yW-synthesising	InterPro:tRNA_yW-synthesising-like_sf	:

Description

tRNA wybutosine-synthesizing protein 2/3/4

Coordinates

chr7:-:158312986..158322909

Molecular Weight (calculated)

118941.0 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.239

Length

1084 amino acids

Sequence
(BLAST)

0001: MDFGRRKAAA LAALSSPTPD RSPKGGVDAP IAPLLDALNS HPDLFTTSSC SGRVSVLAQP PPPHEGWGEG APKPKKKARG GGWVYVSHDP ADPDAVVEQL
0101: FGGSGSGVAG DELVFRFEPM IVAVECRDVA AAAALVAAAI GAGFRESGIT SLQKRAMVAI RCSIRMEVPL GQIDELVVSP EYVRYLVRIA NSKMEANKRR
0201: MNGFLDLLQT KGLSYPSGLS NNSNSGGQSD DYEASVGPEV KIPSDTSAKT NDEYLVTKMR NGGRSRDDDD TGSIEAQYFG KQDSAWSQGV NHGSGNAKRQ
0301: LFRLLTLEKL RENKNHLSTT TLKISGEPIE KLFLWGQASC VFTIGEEQQV LTFGGFGGPG RHARRNYSLL LDHKSGLLTE MIFKASPSPR MGHTVTAVDN
0401: TTYIIGGRGG PSEILDDVWI LPSVGNTWSK LECCGDLFRP RHRHAAAAVA SKIYVFGGLS NEGIYSCMNV LDTKNMQWSV LAASGEWPCA RHSHSMVSYG
0501: TNLFMFGGHD GQRALKDFYS FDTTKLRWNK ENTNGGTPSP RFSHCMFIYK NYLGILGGCP ITENNQEVTL LNINHRVWFC VSVPLLSQSL CVRSSSVVIK
0601: DDLVILGGGA SCYAFGTKFS QPIVLDLHSV ESMFKYDRNK DGTVQRRDAI SVVELSRDEQ NGILDHDTKL QDACSGSLTD SSPLVLQLGK TYAKLAKDIM
0701: KKFGWLDLSR KVRISHDNGH VLFPINESFC ALNAEEHINR NLDDSCTFGE SLVFSEKKLV GDNLSLQDAL IFFSSCNGSV MKDELAISRK PSKSPQTIMK
0801: ELVSSLLESK GMPSQLLQQL PARWETLGDI VILPKTCFKN PLWESVSEEL WPLVAKSLGA QRLARQGKIM PNGTRDSTLE LLLGDNGWVT HYENGICYSL
0901: DATKCMFSSG NRSEKLRMGQ LNCRDEVVVD LFAGIGYFVL PFLVKANAKL VYACEWNPHA LEALRRNVSD NRVEDRCIIL EGDNRVTAPK SVADRVCLGL
1001: LPSSECSWAT AVEALRVGGG VLHIHGNVND SDETRWLDSV VESISNVAKN HGLSWNVSVE HVERVKWYGP RIRHLVVDVT CRQI

Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)

001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR

Arabidopsis Description

tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.