CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021624_P002	Maize	mitochondrion	91.03	90.77
TraesCS2A01G223200.1	Wheat	cytosol	73.36	72.95
TraesCS2D01G229200.1	Wheat	cytosol	73.27	72.86
TraesCS2B01G248800.1	Wheat	cytosol	73.17	72.77
HORVU2Hr1G046680.19	Barley	cytosol	71.97	71.18
GSMUA_Achr6P29460_001	Banana	cytosol	56.34	57.08
Solyc05g055610.2.1	Tomato	cytosol	49.58	53.92
PGSC0003DMT400060067	Potato	cytosol	36.45	52.74
AT4G04670.1	Thale cress	cytosol	48.47	52.66
VIT_10s0116g01770.t01	Wine grape	cytosol	50.51	52.4
Bra000803.1-P	Field mustard	cytosol	47.55	52.08
CDY21313	Canola	cytosol	46.99	51.21
CDX90875	Canola	cytosol	47.64	51.04
KRH51088	Soybean	cytosol	49.49	49.77
KRH02069	Soybean	cytosol	25.44	44.64
KXG37190	Sorghum	cytosol	8.79	18.92
EES16101	Sorghum	cytosol, nucleus, plastid	9.44	18.92
KXG34722	Sorghum	cytosol	5.83	18.69
EER90565	Sorghum	plastid	11.1	18.21
OQU85983	Sorghum	cytosol	8.14	16.83
EES00630	Sorghum	cytosol	9.16	16.15
KXG26585	Sorghum	nucleus	9.34	15.35
KXG23613	Sorghum	mitochondrion	9.44	14.74
OQU83951	Sorghum	mitochondrion	8.97	14.12

Protein Annotations

Gene3D:2.120.10.80	Gene3D:3.30.1960.10	Gene3D:3.40.50.150	MapMan:35.1	UniProt:A0A1B6QEI3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:IPR015915	InterPro:IPR030382	InterPro:IPR036602
EnsemblPlants:KXG36320	ProteinID:KXG36320	ProteinID:KXG36320.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:MeTrfase_TRM5/TYW2
PFAM:PF01344	PFAM:PF02475	PFAM:PF02676	PFAM:PF13418	PFAM:PF13854	PFscan:PS51684
PANTHER:PTHR23245	PANTHER:PTHR23245:SF25	MetaCyc:PWY-6342	MetaCyc:PWY-7286	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3002G317200
SUPFAM:SSF111278	SUPFAM:SSF117281	SUPFAM:SSF53335	UniParc:UPI0001C80E60	SEG:seg	InterPro:tRNA_yW-synthesising
InterPro:tRNA_yW-synthesising-like_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:68991417..68998318

Molecular Weight (calculated)

118573.0 Da

IEP (calculated)

7.344

GRAVY (calculated)

-0.229

Length

1081 amino acids

Sequence
(BLAST)

0001: MDFGRRKAAA LAALSSPTPD KSPKGGVDAP IAPLLDVLNS HPDLFTTSSC SGRVSVLAQP PPQHEGQGDG ATKPKKKARG GGWVYVSHDP ADPDAVVEQL
0101: FGGSGSGVAG DELVFRFEPM IVAVECRDAA AAAALVAAAI GAGFRESGIT SLQKRAMVAI RCSIRMEVPL GQIDELVVSP EYVRYLVRIA NSKMEANKRR
0201: MDGFLDLFQT KGLSYSSELS NNCNGSGGQS VDYEASMGPE VKIPLDKCAK TNDEYLVTKR RNGGHSCDDD DTGSIEARYF GNQDSAWSKG AKHGFGNAKR
0301: LLTQEKLSEK KNHLSTTTLK ISGEPIEKLF LWGQSSCVFT VGEEQQVLTF GGFGGPGRHA RRNYSLLLDH KSGFLIEMIF KASPSPRMGH TVTAVGNSTY
0401: LIGGRGGPSE ILDDVWVLLS TGNTWSKVEC CGDLFQPRHR HAAAAVASKI YVFGGLSNEG IYSCMNVLDT KNMQWSVLAA SGEWPCARHS HSMVSYGTNL
0501: FMFGGHDGQR ALKDFYSFDT TTLRWNKENT NGGFPSPRFS HCMFIYKNYL GILGGCPITE NNQEISLLNL KHRVWFRVSV PLLSQSLCVR SSSVVIKDDL
0601: VILGGGASCY AFGTKFSQPI ILDLHSVESM FQYDRNKDDT VQSRDAISAA DLPRDGQNGI FDHDTKSQDA CSGGLMDSGP LVLQLEKTYA KLAKDILKKF
0701: GWLDLSRKVR VSHDNGHVLF PIKEAFRVLN AEEHIKMTHD VSSTFGESLL FTEKKLVVDN LSLKDALNIL SSCSGSFMKD ELAISRKPSK SPQTIMKELV
0801: SSLLESKGMP PQLLEQLPAR WETLGDVVIL PKTCFKNPLW ESVSEELWPL VAKSLGAQRL ARQGKIMPNG TRDSTLELLL GDNGWVTHYE NGICYSLDAT
0901: KCMFSSGNRS EKLRMGQLNC RDEVVVDLFA GIGYFVLPFL VKANAKLVYA CEWNPHALEA LRRNVSDNSV EDRCIILEGD NRVTAPKGVA DRVCLGLLPS
1001: SECSWATAVE ALRIGGGILH IHGNVNDSDE TRWLDNVVES ISNIAKNHGL SWNVLVEHVE RVKWYGPHIR HLVVDVRCRQ I

Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)

001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR

Arabidopsis Description

tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.