CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0822800-01	Rice	cytosol	82.41	83.04
Zm00001d051876_P002	Maize	nucleus	91.78	80.81
TraesCS6B01G450700.1	Wheat	cytosol	81.64	80.57
TraesCS6D01G389800.2	Wheat	cytosol	82.03	80.19
HORVU6Hr1G093000.5	Barley	cytosol	80.88	79.21
TraesCS6A01G406400.1	Wheat	cytosol	82.6	75.0
GSMUA_Achr9P23600_001	Banana	cytosol	59.27	55.16
PGSC0003DMT400070308	Potato	cytosol	37.48	53.7
VIT_13s0019g05290.t01	Wine grape	cytosol	51.24	52.76
KRG92113	Soybean	cytosol	36.52	52.04
Solyc11g007960.1.1	Tomato	cytosol	47.42	50.41
KRH34674	Soybean	cytosol	46.27	48.02
Bra005805.1-P	Field mustard	cytosol	46.08	47.91
CDY11290	Canola	cytosol	46.08	47.91
CDY58438	Canola	cytosol	45.7	47.51
AT5G04420.3	Thale cress	cytosol	46.65	47.47
KRG92111	Soybean	cytosol	10.71	40.88
EES16101	Sorghum	cytosol, nucleus, plastid	36.9	35.81
EER90565	Sorghum	plastid	41.11	32.63
KXG34722	Sorghum	cytosol	13.0	20.18
OQU83951	Sorghum	mitochondrion	26.2	19.94
KXG23613	Sorghum	mitochondrion	26.0	19.65
KXG37190	Sorghum	cytosol	17.97	18.73
EES00630	Sorghum	cytosol	17.02	14.52
KXG26585	Sorghum	nucleus	16.25	12.92
KXG36320	Sorghum	cytosol, nucleus, peroxisome	16.83	8.14

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8059704	UniProt:A0A1Z5RQD7	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2
EnsemblPlants:OQU85983	ProteinID:OQU85983	ProteinID:OQU85983.1	PFAM:PF01344	PFAM:PF07646	PFAM:PF13418
PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SMART:SM00612	EnsemblPlantsGene:SORBI_3004G350700	SUPFAM:SSF117281	SUPFAM:SSF57997
UniParc:UPI0001A86122	RefSeq:XP_002454805.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:67934120..67938364

Molecular Weight (calculated)

56399.0 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.349

Length

523 amino acids

Sequence
(BLAST)

001: MGEGINGDAG LAAAPYHQWV LLSPAGGSPR PPARYKHAAQ VVQDKLYVVG GSRNGRSLSD VQVFDFRTST WSALNPTRDS NQLNHENNAA GGSFPALAGH
101: SLVKWKNYLV VVAGNTRSSS SSSSNKVSVW LIDVQANSWS AVDTYGKVPT ARGGQSVSLL GSRLLMFGGE DNKRRLLNDL HILDLETMMW EEIKSEKGGP
201: APRYDHSAAV YTDQYLLIFG GSSHSTCFND LYLLDLQTLE WSQPDAQGAH ITPRSGHAGA MIDENWYIVG GGDNANGSTD TVVMNASKFV WSVVTSVSAR
301: DPLACEGLTL CSTTVDGEKV LIAFGGYNGK YSNEIFVLKP KARNLVQPRL LQSPAAAAAA ASVTAAYAVI TGTDEKTRDI VATDDFDIKR AQPASNSKKF
401: VAEIDVLNGE NGKLASRLAE VRDENSKLKD KLDMANLSYG ELAKELKSVQ DQLAAEGSRC QKLESQIATA RKRLESAGSL ENELDVLHQQ ISQVEQTIAT
501: TQRRKSGGVW KWVAGSAEVS DDE

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.